CF836038

Overview
NameCF836038
Unique NameCF836038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836038 vs. ExPASy Swiss-Prot
Match: DNJ11_ARATH (Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.531e-23
Identity = 66/155 (42.58%), Postives = 85/155 (54.84%), Query Frame = -1
Query:  287 SQSQPTSVKFRPRPLRVSASACASTAERTRTHHHIT---SPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQ-NENSAYKFMKLHEAYETLFDPKKRADYDRTLFRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRRTWETDQCW 739
            S   P S   R  P  VSAS   +  E +   H I    +  P SLY++L +  GAT Q+IK+AYR+LAR+ HPDVA   + + +SA +FMK+H AY TL DP+KR+ YDR + RR RP               T   S   +Y  R WETDQCW
Sbjct:   21 SPISPPSRTARISPPLVSASCSYTYTEDSPRLHQIPRRLTTVPASLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEKRSVYDRRMLRRSRP--------------LTVGTSGLGSYVGRNWETDQCW 161          
BLAST of CF836038 vs. ExPASy Swiss-Prot
Match: DNJ20_ARATH (Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.510e-12
Identity = 52/149 (34.90%), Postives = 77/149 (51.68%), Query Frame = -1
Query:  368 STLASSAHLIGPGFITNETHSQSQPTSVKFRPRPLRVS---ASACASTAERTRTHHH--ITSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLFDPKKRADYDRTLFRRRRPSGSPFAVSG 799
            S L+++ H   P F   +  S  QPTS+     P  +S    +  +ST  ++R  H   +      S Y++LG+    T  EIK AY++LAR  HPDV+   + E    +F+++ EAYETL DP++R  YDR L       G  F+ SG
Sbjct:    8 SILSTNHH---PFFYKQQPISSLQPTSI-----PTTISYPTRTRFSSTRIQSRLTHDDPVKQSEDLSFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRRRVLYDRDL-----SMGFSFSFSG 143          
BLAST of CF836038 vs. ExPASy Swiss-Prot
Match: DNAJ_CARHZ (Chaperone protein dnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.575e-12
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = -1
Query:  419 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLFDPKKRADYDR 610
            YEILG+   AT +EIK AYRKLAR  HPDV     + N+A KF +++EAYE L DP+KRA YD+
Sbjct:    6 YEILGVARNATPEEIKKAYRKLARKYHPDV--NKDDPNAAEKFKEINEAYEVLSDPEKRARYDQ 67          
BLAST of CF836038 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCR (Chaperone protein dnaJ OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = -1
Query:  419 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLFDPKKRADYDR 610
            YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE L D +KRA YD+
Sbjct:    7 YEVLGLSKGASTDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of CF836038 vs. ExPASy Swiss-Prot
Match: DNAJ_BACC4 (Chaperone protein dnaJ OS=Bacillus cereus (strain B4264) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = -1
Query:  419 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLFDPKKRADYDR 610
            YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE L D +KRA YD+
Sbjct:    7 YEVLGLSKGASTDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of CF836038 vs. ExPASy Swiss-Prot
Match: DNAJ_BACC2 (Chaperone protein dnaJ OS=Bacillus cereus (strain G9842) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = -1
Query:  419 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLFDPKKRADYDR 610
            YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE L D +KRA YD+
Sbjct:    7 YEVLGLSKGASTDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of CF836038 vs. ExPASy Swiss-Prot
Match: DNAJ_EXISA (Chaperone protein dnaJ OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = -1
Query:  419 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLFDPKKRADYDR 610
            YE+LG+   A+ Q+IK AYRKLAR  HPD+   +Q  ++A KF ++ EAYE L D +KRA YDR
Sbjct:    7 YEVLGLDKSASAQDIKRAYRKLARQYHPDI---NQEADAADKFKEIGEAYEVLSDEQKRAQYDR 67          
BLAST of CF836038 vs. ExPASy Swiss-Prot
Match: DNAJ_HYDTH (Chaperone protein dnaJ OS=Hydrogenobacter thermophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = -1
Query:  413 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLFDPKKRADYDRTL 610
            Y+ILG+   AT +EIK AYR+LA+  HPD++A   +EN++ KF +++EAY  L D ++R +YDR L
Sbjct:    7 YQILGVSKDATAEEIKKAYRRLAKEYHPDISA---DENASEKFKEINEAYHILSDEERRKEYDRIL 69          
BLAST of CF836038 vs. ExPASy Swiss-Prot
Match: DNAJ_BACWK (Chaperone protein dnaJ OS=Bacillus weihenstephanensis (strain KBAB4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = -1
Query:  419 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLFDPKKRADYDR 610
            YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE L D +KRA YD+
Sbjct:    7 YEVLGLSQGASKDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of CF836038 vs. ExPASy Swiss-Prot
Match: DNAJ_BACSK (Chaperone protein dnaJ OS=Bacillus clausii (strain KSM-K16) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = -1
Query:  419 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLFDPKKRADYDR 610
            YE+LG+   A+ +E+K AYRKLAR  HPDV   ++ E++  KF ++ EAY+TL DP+K+A YD+
Sbjct:    7 YEVLGVDRNASVEEVKKAYRKLARKYHPDV---NKEEDAEAKFKEVKEAYDTLSDPQKKARYDQ 67          
The following BLAST results are available for this feature:
BLAST of CF836038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
DNJ11_ARATH5.531e-2342.58Chaperone protein dnaJ 11, chloroplastic OS=Arabid... [more]
DNJ20_ARATH1.510e-1234.90Chaperone protein dnaJ 20, chloroplastic OS=Arabid... [more]
DNAJ_CARHZ2.575e-1257.81Chaperone protein dnaJ OS=Carboxydothermus hydroge... [more]
DNAJ_BACCR2.847e-1153.13Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]
DNAJ_BACC42.847e-1153.13Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]
DNAJ_BACC22.847e-1153.13Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]
DNAJ_EXISA3.718e-1153.13Chaperone protein dnaJ OS=Exiguobacterium sp. (str... [more]
DNAJ_HYDTH4.856e-1148.48Chaperone protein dnaJ OS=Hydrogenobacter thermoph... [more]
DNAJ_BACWK4.856e-1153.13Chaperone protein dnaJ OS=Bacillus weihenstephanen... [more]
DNAJ_BACSK4.856e-1150.00Chaperone protein dnaJ OS=Bacillus clausii (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836038 ID=CF836038; Name=CF836038; organism=Citrus sinensis; type=EST; length=811bp
TTTTTTTTTTTTTTTTTACTGGAGAATTCTGCGATTTACTCCCTAAAAAA
AGCGATGTACAGAGAATTGAAAAAGGCTAATCCTTGAACTTTTACATTGT
ACCCATTGCAATTGCAGGCTGTAAAAATGCCGCCTGGATTAACAAATTTC
AATTACAATCATAAATAGCTACACGCGTTAGCATTAATCCCCAGACGTTA
AAGGGCAGCATCTCTAATCCTAATTCCTGAACAGCTAAGATCATATAACA
TAATCTTGCAGTTGCAGCTATGTATTTTATTTTCTACCAGCACTGATCAG
TCTCCCATGTCCGCCTTGAGTAGGCACAAAATCTTGAATTCGACGAAGTG
GCCATCGTATTTGCCACTCCCGAGACCGCAAATGGGGAACCCGATGGCCT
TCTTCGCCTGAAAAGGGTACGATCGTAGTCCGCACGCTTCTTGGGATCAA
ATAGAGTTTCGTAAGCTTCGTGTAATTTCATGAACTTATATGCTGAATTC
TCATTTTGACTCTTAGCGGCAACATCCGGGTGCAAAACTCTTGCTAATTT
CCGATAAGCAGTCTTGATTTCCTGACACGTGGCACCCGTCTGAATCCCCA
GGATTTCGTAGAGTGAGCCGGGTCCAGGAGAAGTAATGTGATGATGGGTT
CTTGTTCTCTCCGCCGTTGAGGCGCAAGCCGATGCCGATACGCGAAGTGG
GCGGGGGCGGAATTTGACAGACGTGGGCTGTGATTGTGAATGAGTCTCGT
TGGTGATAAATCCCGGGCCAATCAGATGGGCTGAAGATGCAAGAGTAGAC
ATGATGGATTG
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