CF836069

Overview
NameCF836069
Unique NameCF836069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836069_ssr125 microsatellite CF836069_ssr125:125..142. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.044e-27
Identity = 76/177 (42.94%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  284 SPAELLDSPVLLNTS-NVLPSPTTGAFQSFNWKSNIGSNDQQSVKQENKNQSDFSF---------PTQTRPNTTSSIAQQNQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLD 784
            SP+  LDSP  +++S NVL SPTTGA  + N  +  G N+       N N  DFSF         PT T   TT++    +  +  QE  K++                       +        S   RE +K +DGYNWRKYGQKQVKGSENPRSYYKCTFP+CPTKKKVERSL+
Sbjct:   65 SPSLFLDSPAFVSSSANVLASPTTGALIT-NVTNQKGINEGDKSNNNNFNLFDFSFHTQSSGVSAPTTTTTTTTTTTTTNSSIFQSQEQQKKNQS---------------EQWSQTETRPNNQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLE 225          

HSP 2 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 50/154 (32.47%), Postives = 70/154 (45.45%), Query Frame = 2
Query:  341 SPTTGAFQSFNWKSNIGSNDQQSVKQENKN----QSDFSFPTQTRPNTTSSIAQQNQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKKS----DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERS 778
            S ++  F S  + +++  N Q S  Q N N    QSD SF  Q   NTTS     ++         +D +                       G+   ++ + + ++       DDGY WRKYGQK VKG+ NPRSYYKCT   CP +K VER+
Sbjct:  249 SSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSD-SFGMQQEDNTTSDSVGDDEFEQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERA 401          
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.263e-25
Identity = 84/249 (33.73%), Postives = 113/249 (45.38%), Query Frame = 2
Query:   44 MNPTSFTDLLTSSAPADHAQLHXXXXXXXXXXXXRGLSDRIAERTGSGVPKFKSIQXXXXXXXXXXXXXXXXXXXXXAGLSPAELLDSPVLLNTSNVLPSPTTGAF--QSFNWKSNIGSNDQQSVKQENKNQSDFSFPTQTRPNTTSSIAQQNQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLD 784
            M+ TSFTDLL SS       +                     ERTGSG+PKFK+ Q                        + ++ LDSP+LL++S+ L SPTTG F  Q FN  +N              N SDF +  Q++P+  SS  Q+   +  Q+  K+   +                     FG  +  +      S+ S+DGY WRKYGQKQVK SENPRSY+KCT+P C +KK VE + D
Sbjct:    1 MSSTSFTDLLGSSG------VDCYEDDEDLRVSGSSFGGYYPERTGSGLPKFKTAQPPPLPISQSSH-----------NFTFSDYLDSPLLLSSSHSLISPTTGTFPLQGFNGTTN--------------NHSDFPWQLQSQPSNASSALQET--YGVQDHEKKQEMIPNEIATQNNNQ---------SFGTERQIKIPAYMVSRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASD 207          

HSP 2 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 2
Query:  662 DGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERS 778
            DG+ WRKYGQK VKG+ NPRSYYKCTF  C  KK+VERS
Sbjct:  329 DGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERS 367          
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.566e-25
Identity = 70/170 (41.18%), Postives = 88/170 (51.76%), Query Frame = 2
Query:  278 GLSPAELLDSPVLLNTSNVLPSPTTGAF--QSFNWKSNIGSNDQQSVKQENKNQSDFSFPTQTRPNTTSSIAQQNQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL 781
            GL+PA+ LDSP+L  +SN+LPSPTTG F  QS N+ +N    D+  +K E+           T P    S+  Q  P                                         +S+ +  +K SDDGYNWRKYGQKQVKGSENPRSY+KCT+P+C TKKKVE SL
Sbjct:   34 GLTPADFLDSPLLFTSSNILPSPTTGTFPAQSLNYNNNGLLIDKNEIKYEDT----------TPPLFLPSMVTQPLP------------------------------------QLDLFKSEIMSSNKTSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSL 157          

HSP 2 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 2
Query:  659 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERS 778
            DDGY WRKYGQK VKG+ NPRSYYKCTF  C  +K VER+
Sbjct:  234 DDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERA 273          
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.760e-22
Identity = 68/172 (39.53%), Postives = 83/172 (48.26%), Query Frame = 2
Query:  278 GLSPAELLDSPVLLNTSNVLPSPTTGAFQSFNWKSNIGSNDQQSVKQENKNQSDFSFPTQTRPNTTSSIAQQ---NQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLD 784
            GLSPA LLDSP  L     L SP  G++     +  +     Q+V+     Q    +P  ++  + SS   Q   + P   Q  T                          D    +H+  QP+   K +DDGYNWRKYGQKQVKGSE PRSYYKCT P CP KKKVERSLD
Sbjct:  129 GLSPAMLLDSPSFLG----LFSPVQGSY-GMTHQQALAQVTAQAVQANANMQPQTEYPPPSQVQSFSSGQAQIPTSAPLPAQRETS-------------------------DVTIIEHRSQQPLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLD 270          
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.733e-21
Identity = 64/173 (36.99%), Postives = 87/173 (50.29%), Query Frame = 2
Query:  278 GLSPAELLDSPVLLNTSNVLPSPTTGAFQSFNWKSNIGSNDQ----QSVKQENKNQSDFSFPTQTRPNTTSSIAQQNQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLD 784
            GLSPA LLDSP        L SP  G F   + ++      Q     +V  +   QS++   TQ +       +    P ++  + +  ++ +                   +   ++H+ SQP    K +DDGYNWRKYGQKQVKGS+ PRSYYKCT P+CP KKKVERSLD
Sbjct:  132 GLSPATLLDSPSFFG----LFSPLQGTFGMTHQQALAQVTAQAVQGNNVHMQQSQQSEYPSSTQQQQQQQQQASLTEIP-SFSSAPRSQIRASVQETSQGQRETS-------EISVFEHR-SQPQNADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLD 291          
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.569e-19
Identity = 78/244 (31.97%), Postives = 103/244 (42.21%), Query Frame = 2
Query:  149 GLSDRIAERTGSGVPKFKSIQXXXXXXXXXXXXXXXXXXXXXA-GLSPAELLDSPVLLNTSNVLPSPTTGAFQSFNWKSNIGSNDQQSVKQENKNQSD----FSFPTQTRPN------TTSSIAQQNQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQ--------------HQQSQPIRESKKSD---------DGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERS 778
            GLS+RIA R G   P+  +                       + GLSPA LL+SPV L+     PSPTTG F    +   +  N   S K +++   D    FSF   +R +      TT  ++     +N + S+ Q  +                       G  +              HQ+ +   E ++ D         DGYNWRKYGQK VKGSE PRSYYKCT P+C  KKKVERS
Sbjct:   74 GLSERIAARAGFNAPRLNTENIRTNTDFSIDSNLRSPCLTISSPGLSPATLLESPVFLSNPLAQPSPTTGKFP---FLPGVNGNALSSEKAKDEFFDDIGASFSFHPVSRSSSSFFQGTTEMMSVDYGNYNNRSSSHQSAEEVKPGSENIESSNLYGIETDNQNGQNKTSDVTTNTSLETVDHQEEE--EEQRRGDSMAGGAPAEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERS 312          

HSP 2 Score: 70.4774 bits (171), Expect = 1.204e-11
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 2
Query:  659 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERS 778
            DDGY WRKYGQK VKG+ NPRSYYKCT P C  +K VER+
Sbjct:  487 DDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERA 526          
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.243e-16
Identity = 65/171 (38.01%), Postives = 81/171 (47.37%), Query Frame = 2
Query:  278 GLSPAELLDSPVLLNTSNVLPSPTTGAFQSFNWKSNIGSNDQQSVKQENKNQSDFSFPTQTRPNTTSSIAQQNQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKK----SDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERS 778
            GLSPA LL+SPV L  SN L SPTTG   S              V  +      F        + T+S+A Q    +  + T   ++                     D  +Y+ +Q   + +S      +DDGYNWRKYGQK VKGSE PRSYYKCT P+C  KKKVERS
Sbjct:   89 GLSPATLLESPVFL--SNPLLSPTTGKLSS--------------VPSDKAKAELFD-------DITTSLAFQTISGSGLDPTNIALE-------------------PDDSQDYEERQLGGLGDSMACCAPADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERS 217          
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.723e-16
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 2
Query:  617 QHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLD 784
            +H   QP+   K+ +DGYNW+KYGQK+VKGS+ P SYYKCT+  CP+K+KVERSLD
Sbjct:  454 EHMSQQPLNVDKQVNDGYNWQKYGQKKVKGSKFPLSYYKCTYLGCPSKRKVERSLD 509          
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.056e-16
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 2
Query:  626 QSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLD 784
            +S+     + S DGYNWRKYGQKQVKGSE PRSYYKCT P CP KKKVERS++
Sbjct:  154 ESETSTGDRSSVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVE 206          
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.374e-15
Identity = 63/195 (32.31%), Postives = 81/195 (41.54%), Query Frame = 2
Query:  278 GLSPAELLDSPVLLNTSNVLPSPTTGAFQ-------SFNWKSNIGSNDQQSVKQENKNQSDFSF--PTQTRPNTTSSIAQQNQPWNYQ----------ESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKK-------SDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLD 784
            GLSP   L+SPV ++     PSPTTG+         S +  S  G    Q+   E K+ S+F F  P            +   P ++Q           S       +                     G+ Q +  Q  +   +       +DDGYNWRKYGQK VKGSE PRSYYKCT P+C  KK  ERS D
Sbjct:   59 GLSPTSFLESPVFISNIKPEPSPTTGSLFKPRPVHISASSSSYTGRGFHQNTFTEQKS-SEFEFRPPASNMVYAELGKIRSEPPVHFQGQGHGSSHSPSSISDAAGSSSELSRPTPPCQMTPTSSDIPAGSDQEESIQTSQNDSRGSTPSILADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHD 252          

HSP 2 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 2
Query:  632 QPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERS 778
            Q + E    DDGY WRKYGQK V+G+ NPRSYYKCT   CP +K VER+
Sbjct:  372 QTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERA 420          
The following BLAST results are available for this feature:
BLAST of CF836069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
WRK33_ARATH2.044e-2742.94Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRK25_ARATH3.263e-2533.73Probable WRKY transcription factor 25 OS=Arabidops... [more]
WRK26_ARATH5.566e-2541.18Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRKY4_ARATH5.760e-2239.53Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRKY3_ARATH3.733e-2136.99Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRKY2_ARATH1.569e-1931.97Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK34_ARATH1.243e-1638.01Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK19_ARATH4.723e-1662.50Probable WRKY transcription factor 19 OS=Arabidops... [more]
WRK44_ARATH8.056e-1669.81WRKY transcription factor 44 OS=Arabidopsis thalia... [more]
WRK20_ARATH1.374e-1532.31Probable WRKY transcription factor 20 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836069 ID=CF836069; Name=CF836069; organism=Citrus sinensis; type=EST; length=785bp
TCACCACCCAACCAATAACTTCACTTTCTCAACACATCCCTTCATGAACC
CCACTTCTTTCACTGATCTTCTTACATCTTCCGCACCGGCCGATCATGCT
CAACTTCATAGCAATAACAGCAACACAACAACAACAACAACAACTCGTGG
GTTGTCGGATCGTATAGCTGAGAGAACCGGGTCCGGTGTGCCGAAATTCA
AGTCTATCCAGCCTCCTTCATTGCCCATCTCCCCTCCTTCACTTTTCTCT
CCTTCTTCTTACTTCTCTATTCCTGCTGGCCTCAGCCCTGCTGAGCTCTT
GGACTCCCCTGTTTTGCTTAACACTTCCAACGTTCTGCCATCTCCAACAA
CTGGAGCATTTCAATCTTTCAACTGGAAGAGCAATATTGGCAGTAACGAC
CAGCAAAGTGTTAAACAGGAAAACAAAAATCAATCTGATTTCTCATTTCC
AACACAAACAAGGCCCAACACAACATCATCAATTGCACAGCAAAACCAAC
CATGGAATTATCAGGAATCCACAAAGCAAGATGTGAAATTGGCACAGAGT
TTTTCAACAACTTTGCAAAGTAACAATCAGAGCAACAGTGGGTTCCAATC
AGATTTTGGAAACTACCAACACCAACAATCTCAGCCCATTAGAGAGAGTA
AAAAATCTGATGATGGATATAATTGGAGAAAATATGGGCAAAAACAAGTC
AAAGGAAGTGAAAATCCAAGAAGTTATTACAAGTGCACATTCCCAAGTTG
TCCAACAAAGAAAAAAGTTGAAAGGTCATTGGATG
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