CF836072

Overview
NameCF836072
Unique NameCF836072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1151 contig Csv1_Contig1151:508..1293. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 343.969 bits (881), Expect = 5.679e-94
Identity = 175/199 (87.94%), Postives = 191/199 (95.98%), Query Frame = -1
Query:  191 VKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASALEG 787
            VK S+++HKLNSGP+KENKYVILGEKAKA LVRDSKKDIELIITELQKNPLNYTQVSV+ADDILKNVEFDALRI+++KF SVVSF+PTM+TVLSPE+VERE+ESGGKLG+LDSYEIEG E+K E+LQNL EFQFS V+FNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASIT ELIEIISGASALEG
Sbjct:  128 VKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDSYEIEGAESKSEVLQNLTEFQFSSVLFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 326          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.446e-91
Identity = 168/198 (84.85%), Postives = 188/198 (94.95%), Query Frame = -1
Query:  194 VKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASALE 787
            VK+S++L+KLN+GP+KE ++VI+GEKAKAI+ RDSK DI L +TEL KNPLNY QVSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E+E+E GGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSE GARMSAMDSSSRNAGEMLDRLTLTYNRTRQASIT ELIEIISGASALE
Sbjct:  125 VKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 322          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_METC4 (ATP synthase gamma chain OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpG PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.869e-30
Identity = 82/185 (44.32%), Postives = 106/185 (57.30%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K  K + +G+K   +L R  +  I          P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL   E  S    G   + E E  E    IL+ L     +  +F A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  114 KTVKIITIGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGASATGAGSDAAMEFEPNEET--ILETLLPKNLTVQIFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 296          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_METEP (ATP synthase gamma chain OS=Methylobacterium extorquens (strain PA1) GN=atpG PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.199e-29
Identity = 81/185 (43.78%), Postives = 106/185 (57.30%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K  K + +G+K   +L R  +  I          P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL   E  +    G   + E E  E    IL+ L     +  +F A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  114 KTVKIITIGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGAAATGAGSDAAMEFEPNEET--ILETLLPKNLTVQIFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 296          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_METPB (ATP synthase gamma chain OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpG PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.355e-29
Identity = 81/185 (43.78%), Postives = 108/185 (58.38%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K  K + +G+K   +L R  +  I          P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL + +  + G  G   + E E  E    IL+ L     +  +F A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  114 KTVKIMTVGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKIIPAELPQTDGAAKGA-GSDAAMEFEPSEET--ILETLLPKNLTVQVFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 295          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_DROME (ATP synthase subunit gamma, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-gamma PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.861e-28
Identity = 72/184 (39.13%), Postives = 117/184 (63.59%), Query Frame = -1
Query:  197 DKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 745
            +   K   +G+K++AIL R   K+I ++  E+ + P  +   S +A+++L+   ++   +I+Y++F SVVS+  +   + S   VE+      KL   DS +        +++++  EF  + ++F  + E ACSEQ +RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT ELIEIISGA+AL
Sbjct:  124 EANTKVFCVGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTLPIFSGSTVEKSE----KLAVYDSLD-------SDVVKSYLEFSLASLIFYTMKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 296          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_PELUB (ATP synthase gamma chain OS=Pelagibacter ubique GN=atpG PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.175e-28
Identity = 81/200 (40.50%), Postives = 114/200 (57.00%), Query Frame = -1
Query:  197 VKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 787
            +K +K+  +  S   K  K + +G K    L R  K  I   I+      +NY     +   I++N E   FD   I Y+KF +V++ +P    ++  +  E E  S       D+YE E  E   EIL NL     S  +F A+LEN+ SEQG+RMSAMD+++RNAGEM+D+LT+ YNR+RQA+IT ELIEIISGA +L
Sbjct:   99 IKKAKTYFQKISDEGKTLKIITVGSKGYDQLKRVYKDAIVERISFKDSKTINYLDAEKVGKMIIENFEKEEFDVCTIFYNKFKNVITQIPQEQQIIPLKTSEAEENSSE-----DNYEFEPDED--EILSNLLPKNISTQIFKAMLENSASEQGSRMSAMDNATRNAGEMVDKLTIEYNRSRQAAITKELIEIISGAESL 291          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_METS4 (ATP synthase gamma chain OS=Methylobacterium sp. (strain 4-46) GN=atpG PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.987e-27
Identity = 77/183 (42.08%), Postives = 106/183 (57.92%), Query Frame = -1
Query:  197 KYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 733
            K + +G+K   IL R+ +  I  +I       L +     +A ++L   E   FD   + YS+F SV+  +PT     + +++  E    G+  + D+ YE E  E  GEIL  L     +  +  A+LENA SEQGARMSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  117 KIICVGKKGYDILRREFRDQIVELIELRGVRQLGFDNAETIAQNLLGRFEAGEFDIATLFYSRFRSVIVQIPT-----AQQIIPAEIPPAGEAAQTDAAYEYEPDE--GEILAALLPKNLTVQILRALLENAASEQGARMSAMDNATRNAGEMIKKQTLVYNRTRQAQITKELIEIISGAEAL 292          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_JANSC (ATP synthase gamma chain OS=Jannaschia sp. (strain CCS1) GN=atpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.820e-27
Identity = 76/190 (40.00%), Postives = 109/190 (57.37%), Query Frame = -1
Query:  197 GPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSP--ELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 751
            G  K  K + +G+K +  L RD    +   +       L Y   + +A D+L   E   FD   I +++F SV+S +PT   ++    E VE   ++    G L  YE     ++  +L++L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M+DRLT+ YNR+RQA IT ELIEIISGA AL
Sbjct:  111 GEGKTIKILTVGKKGREQLRRDYADHLIGHVDLSDVKRLGYADAASIATDVLNRFEEDEFDVATIFFNRFESVISQIPTATQIIPAVFEDVEEADDTSKDSGTLYEYE----PSEEAVLEDLLPRGIATQIFTALLENGASEQGARMSAMDNATRNAGDMIDRLTIEYNRSRQAVITSELIEIISGAEAL 296          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_PARDP (ATP synthase gamma chain OS=Paracoccus denitrificans (strain Pd 1222) GN=atpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.334e-26
Identity = 76/185 (41.08%), Postives = 109/185 (58.92%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K+   + +G+K +  L R+        +   +   + Y     +AD+IL    N EFD   + Y++F SV+S +PT   V+ P ++E      G+ G    Y+ E  E    IL +L     +  +F A+LENA SEQGARM+AMD+++RNAG+M+DRLT  YNR+RQA+IT ELIEIISGA AL
Sbjct:  114 KQVSILTVGKKGREQLKREYGDLFVNHVDLSEVKRIGYDNARAIADEILDRFDNGEFDVATLFYNRFESVISQVPTARQVI-PAVIEE-----GEAGASSLYDYEPDENA--ILNDLLPRSVATQVFAALLENAASEQGARMTAMDNATRNAGDMIDRLTTVYNRSRQAAITKELIEIISGAEAL 290          
The following BLAST results are available for this feature:
BLAST of CF836072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG3_IPOBA5.679e-9487.94ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG3_ARATH3.446e-9184.85ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG_METC49.869e-3044.32ATP synthase gamma chain OS=Methylobacterium chlor... [more]
ATPG_METEP2.199e-2943.78ATP synthase gamma chain OS=Methylobacterium extor... [more]
ATPG_METPB8.355e-2943.78ATP synthase gamma chain OS=Methylobacterium popul... [more]
ATPG_DROME1.861e-2839.13ATP synthase subunit gamma, mitochondrial OS=Droso... [more]
ATPG_PELUB3.175e-2840.50ATP synthase gamma chain OS=Pelagibacter ubique GN... [more]
ATPG_METS45.987e-2742.08ATP synthase gamma chain OS=Methylobacterium sp. (... [more]
ATPG_JANSC7.820e-2740.00ATP synthase gamma chain OS=Jannaschia sp. (strain... [more]
ATPG_PARDP1.334e-2641.08ATP synthase gamma chain OS=Paracoccus denitrifica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836072 ID=CF836072; Name=CF836072; organism=Citrus sinensis; type=EST; length=787bp
AACTATATTTCCATATAACGCAGAGTATAATGTGTTAATTCCCCAAGGTT
TTACCCCTTGGAGAGATTATGTGGAGTAGCTCAACAAAAACCTCTTATGA
AAGTACCACATTTGAAGTTTGAACAAAGCCTCCACCAAGGATTTATTTCG
TCACTGTCAAAAAAAGTGAGCACTGTCGCTTTTGTAATCAGCCTTCCAGT
GCTGATGCTCCAGATATAATCTCAATCAACTCGGGGGTGATAGATGCTTG
ACGAGTTCTGTTATAAGTAAGAGTGAGGCGATCAAGCATTTCTCCTGCAT
TTCTGCTTGAGCTATCCATGGCAGACATCCTTGCCCCTTGCTCACTGCAG
GCATTCTCCAACACCGCATTGAACATGACACAAGAGAATTGGAACTCAGC
CAGATTTTGAAGTATTTCACCCTTTGTTTCACCGCCTTCAATTTCATAGG
AGTCTAGCTCACCAAGCTTTCCCCCAGATTCGGCTTCTCTCTCCACAAGC
TCAGGCGATAATACAGTTGCCATTGTCGGCAGAAAGGAGACCACGGAATG
GAACTTGCTATAGATAATCCTCAAAGCATCAAATTCTACATTCTTTAAGA
TATCATCTGCAAGAACGGAAACCTGGGTATAATTGAGAGGATTTTTCTGT
AACTCAGTTATGATGAGTTCAATATCTTTCTTTGAGTCACGTACTAATAT
TGCCTTTGCCTTCTCTCCCAAGATGACGTATTTGTTTTCTTTGTCGGGAC
CAGAATTCAACTTGTGCAAACTCTTGCTTATCTTAAC
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