CF836087

Overview
NameCF836087
Unique NameCF836087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13683 contig Csv1_Contig13683:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836087 vs. ExPASy Swiss-Prot
Match: SFRS2_RAT (Splicing factor, arginine/serine-rich 2 OS=Rattus norvegicus GN=Sfrs2 PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.494e-21
Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 2
Query:   59 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 361
            +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF836087 vs. ExPASy Swiss-Prot
Match: SFRS2_PIG (Splicing factor, arginine/serine-rich 2 OS=Sus scrofa GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.494e-21
Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 2
Query:   59 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 361
            +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF836087 vs. ExPASy Swiss-Prot
Match: SFRS2_PANTR (Splicing factor, arginine/serine-rich 2 OS=Pan troglodytes GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.494e-21
Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 2
Query:   59 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 361
            +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF836087 vs. ExPASy Swiss-Prot
Match: SFRS2_MOUSE (Splicing factor, arginine/serine-rich 2 OS=Mus musculus GN=Sfrs2 PE=1 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 4.494e-21
Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 2
Query:   59 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 361
            +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF836087 vs. ExPASy Swiss-Prot
Match: SFRS2_HUMAN (Splicing factor, arginine/serine-rich 2 OS=Homo sapiens GN=SFRS2 PE=1 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 4.494e-21
Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 2
Query:   59 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 361
            +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF836087 vs. ExPASy Swiss-Prot
Match: SFRS2_CHICK (Splicing factor, arginine/serine-rich 2 OS=Gallus gallus GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.494e-21
Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 2
Query:   59 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 361
            +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF836087 vs. ExPASy Swiss-Prot
Match: SFRS2_BOVIN (Splicing factor, arginine/serine-rich 2 OS=Bos taurus GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.494e-21
Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 2
Query:   59 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 361
            +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF836087 vs. ExPASy Swiss-Prot
Match: RSP4_CAEEL (Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans GN=rsp-4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.715e-17
Identity = 44/100 (44.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:   65 RSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG-PNAERIQKG 361
            R   PDI    SL + N++++TT +DL   F++YG + D+ IPRD+ +  S+GF FVR+    +A+ A+DR DG++VDGRE+ V  AKY  P+ ER  +G
Sbjct:    9 RRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGRG 108          
BLAST of CF836087 vs. ExPASy Swiss-Prot
Match: SFR2B_HUMAN (Splicing factor, arginine/serine-rich 2B OS=Homo sapiens GN=SFRS2B PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 2
Query:   74 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 334
            PPD+    +L V N+T+RT+ D L  +F+KYG+V D++IPR+  T   RGFAFVR+    +AQ A   +DG  +DGRE+ VQ A+YG
Sbjct:    7 PPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93          
The following BLAST results are available for this feature:
BLAST of CF836087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SFRS2_RAT4.494e-2149.51Splicing factor, arginine/serine-rich 2 OS=Rattus ... [more]
SFRS2_PIG4.494e-2149.51Splicing factor, arginine/serine-rich 2 OS=Sus scr... [more]
SFRS2_PANTR4.494e-2149.51Splicing factor, arginine/serine-rich 2 OS=Pan tro... [more]
SFRS2_MOUSE4.494e-2149.51Splicing factor, arginine/serine-rich 2 OS=Mus mus... [more]
SFRS2_HUMAN4.494e-2149.51Splicing factor, arginine/serine-rich 2 OS=Homo sa... [more]
SFRS2_CHICK4.494e-2149.51Splicing factor, arginine/serine-rich 2 OS=Gallus ... [more]
SFRS2_BOVIN4.494e-2149.51Splicing factor, arginine/serine-rich 2 OS=Bos tau... [more]
RSP4_CAEEL6.715e-1744.00Probable splicing factor, arginine/serine-rich 4 O... [more]
SFR2B_HUMAN1.145e-1648.28Splicing factor, arginine/serine-rich 2B OS=Homo s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02G08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836087 ID=CF836087; Name=CF836087; organism=Citrus sinensis; type=EST; length=745bp
CCAAAGGCAAACCCTTAGCTCAGAGCTCTAATCGAAGAACGAAAGAAAGA
TGCCTCTCTTCGGGAGGTCAGGACCTCCAGATATCACCGACACTTACTCT
CTTCTCGTCCTCAACATAACCTTCCGTACTACTGCTGATGATCTGTTTCC
GCTTTTTGACAAGTACGGCAAGGTCGTCGATATTTTCATACCTAGAGATC
GAAGGACGGGGGACTCCCGTGGTTTTGCTTTTGTGCGGTACAAATATGCT
GATGAGGCGCAAAAGGCTGTTGATAGACTGGATGGACGAGTTGTTGATGG
TCGTGAAATAACAGTTCAGTTTGCAAAATATGGTCCAAATGCCGAGAGGA
TTCAGAAAGGAAGGATTATTGAATCATTCCCGAGATCGAAGCACAGGTCA
AGGAGTCGCAGTCCTCGGAGAAGATACAGAGATGATTACAGAGATAGAGA
TTATCGAAGGAGGAGTCGCAGTAGAAGCTGGGATAGGTACGAACGTGACA
GATACCGTGGGAGGGATAGAGATTACCGTCGACGAAGTAGAAGCAGAAGT
GCCAGTCCTGATTACTCCAGAGGCCGTGGCAGAGGCAGATATGATGATTA
TCGCCGGAGTCCTAGTCGATCGGTTGGCAGTGCCTCCCCAGCTCAGCATA
GCCCCAGTCCTGGCAGGAGTCTTTCCCCTCGCAAGAATTCTCCTCTTAGG
GGTGAGAGTTCTGATGGACGCAGTCGTGGTGAGCGGTCTCCATCT
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