CF836092

Overview
NameCF836092
Unique NameCF836092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1788 contig Csv1_Contig1788:26..484. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = -3
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
The following BLAST results are available for this feature:
BLAST of CF836092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_SILLA4.499e-37100.00Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA4.499e-37100.00Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE4.499e-37100.00Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE4.499e-37100.00Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR4.499e-37100.00Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL4.499e-37100.00Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ4.499e-37100.00Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH4.499e-37100.00Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT4.499e-37100.00Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT4.499e-37100.00Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02G11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836092 ID=CF836092; Name=CF836092; organism=Citrus sinensis; type=EST; length=459bp
CATAAAATTTCATTGATCCCATTAATATCAATACAAATTACAAAGTCATC
AGATACTCCCTTTCATTCCAAAACATAAAAATTAAGAAACCCTAAATTTA
ACCACCGAAACCGTAAAGGGTCCTGCCCTGCCTCTTCAAAGCATAAACAA
CATCCATGGCGGTGACAGTCTTACGACGAGCGTGCTCAGTGTAAGTCACA
GCATCACGAATCACGTTCTCCAAAAAGATCTTCAAAACCCCGCGAGTCTC
CTCGTAAATCAGACCGCTGATACGCTTGACTCCGCCACGCCTCGCCAGCC
GCCGGATAGCCGGCTTTGTGATCCCCTGAATGTTATCCCTCAGCACCTTG
CGGTGCCTCTTCGCTCCTCCCTTTCCCAATCCTTTGCCCCCCTTTCCTCT
TCCTGACATTTCTCTTCTGCTTTCCTTCTCTCTCTTTTCAGTTCTTTAAT
TTTATGCTT
back to top