CF836093 | Citrus Genome Database

Overview


Name	CF836093
Unique Name	CF836093
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	489

Libraries


Library Name	Type
Washington Navel Orange Shoot Meristem cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1788	contig	Csv1_Contig1788:25..512.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF836093 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 5.377e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2

Query:  116 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 349
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of CF836093 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 5.377e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2

Query:  116 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 349
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of CF836093 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 5.377e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2

Query:  116 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 349
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of CF836093 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 5.377e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2

Query:  116 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 349
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of CF836093 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 5.377e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2

Query:  116 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 349
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of CF836093 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 5.377e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2

Query:  116 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 349
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of CF836093 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 5.377e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2

Query:  116 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 349
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of CF836093 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 5.377e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2

Query:  116 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 349
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of CF836093 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 5.377e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2

Query:  116 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 349
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of CF836093 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 5.377e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2

Query:  116 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 349
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

The following BLAST results are available for this feature:

BLAST of CF836093 vs. ExPASy Swiss-Prot

BLAST of CF836093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107


Match Name	E-value	Identity	Description
H4_SILLA	5.377e-37	100.00	Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3	[more]
H4_PEA	5.377e-37	100.00	Histone H4 OS=Pisum sativum PE=1 SV=2	[more]
H4_MAIZE	5.377e-37	100.00	Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2	[more]
H4_LOLTE	5.377e-37	100.00	Histone H4 OS=Lolium temulentum PE=3 SV=2	[more]
H4_FLATR	5.377e-37	100.00	Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3	[more]
H4_EUCGL	5.377e-37	100.00	Histone H4 OS=Eucalyptus globulus PE=3 SV=3	[more]
H4_CHEMJ	5.377e-37	100.00	Histone H4 OS=Chelidonium majus PE=3 SV=3	[more]
H4_ARATH	5.377e-37	100.00	Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE...	[more]
H42_WHEAT	5.377e-37	100.00	Histone H4 variant TH091 OS=Triticum aestivum PE=3...	[more]
H41_WHEAT	5.377e-37	100.00	Histone H4 variant TH011 OS=Triticum aestivum PE=3...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS03_02G11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF836093 ID=CF836093; Name=CF836093; organism=Citrus sinensis; type=EST; length=489bp
GAAGCATAAACTTTAAGAACTGAAAAGAGAGAGAAGGAAAGCAGAAGAGA
AACTGTCAGGAAGAGGAAAGGGGGGCAAAGGATTGGGAAAGGGAGGAGCG
AAGAGGCACCGCAAGGTGCTGAGGGATAACATTCAGGGGATCACAAAGCC
GGCTATCCGGCGGCTGGCGAGGCGTGGCGGAGTCAAGCGTATCAGCGGTC
TGATTTACGAGGAGACTCGCGGGGTTTTGAAGATCTTTTTGGAGAACGTG
ATTCGTGATGCTGTGACTTACACTGAGCACGCTCGTCGTAAGACTGTCAC
CGCCATGGATGTTGTTTATGCTTTGAAGAGGCAGGGCAGGACCCTTTACG
GTTTCGGTGGTTAAATTTAGGGTTTCTTAATTTTTATGTTTTGGAATGCT
ATTGAGTATCTGATGACTTTGTAATTTGTATTGATATTTGGTCTATCAAT
GAAATTTTATGTTAATTGTTGCTAAAAAAAAAAAAAAAA