CF836097

Overview
NameCF836097
Unique NameCF836097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6290 contig Csv1_Contig6290:327..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836097 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.170e-13
Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 2 
Query:    2 VSTHVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGIEGHPRAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIG-VSSKDGVRRLAL 295
            VST VN+ F V +  + C+   +W++D+YD+      + T G++G P   TL +WFKIEKAG       Y    CPSVC SC   C+ IG  S  DG  RLAL
Sbjct:  100 VSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG----YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197
[Close]
BLAST of CF836097 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 7.061e-13
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 2 
Query:    2 VSTHVNLRFPVKVSVKPCN--EEPLWKVDSYDDP----LIVTGGIEGHPRAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIGV-SSKDGVRRLALVGDDEP 313
            VST +N+ F    +  PC      +W++D YD+      +  GG++G+P  ET+ +WFKIE+   F   G Y +V CP+VC SC  +C  +G+   + G RRLAL   D+P
Sbjct:  107 VSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE---FCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLAL--SDKP 209
The following BLAST results are available for this feature:
BLAST of CF836097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC3.170e-1342.7221 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU7.061e-1337.84Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02G13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836097 ID=CF836097; Name=CF836097; organism=Citrus sinensis; type=EST; length=544bp
GGTATCCACTCATGTCAACCTGAGATTCCCCGTAAAAGTTTCTGTTAAGC
CCTGTAATGAAGAACCATTGTGGAAAGTTGATAGCTATGACGATCCATTA
ATTGTAACCGGCGGAATTGAGGGCCACCCAAGAGCTGAAACGTTGCTAAA
TTGGTTTAAGATTGAGAAAGCTGGAAATTTTTCATATGGTGGTGTATACA
ATATTGTCCATTGTCCGAGTGTCTGTCTTTCTTGTCCTAGACGCTGCAAC
AAAATTGGCGTTTCTTCTAAGGATGGCGTTCGACGTCTGGCTCTAGTTGG
TGATGATGAACCGGCTTTGAATGTTCTGTTTTTTCCATCAGAGGAAAGAT
CAAGGCTACTTCAAGCTGCTAACGCAATATCAAGGTTTTTTGAAGCTGCT
GAAGCAATATCAATGGCCGCGTAATGAATGAACTAGCTTTATCATTCTAA
ATAATAGACCAGGCTAGTAACCTTTTATCTCTATTACAGAATAAAAATAA
CACCGCCTGTGATCCTTTTGCTGTTGTTAAAAAAAAAAAAAAAA
back to top