CF836101

Overview
NameCF836101
Unique NameCF836101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836101_ssr116 microsatellite CF836101_ssr116:116..127. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1268 contig Csv1_Contig1268:76..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836101 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.584e-58
Identity = 103/146 (70.55%), Postives = 121/146 (82.88%), Query Frame = -1
Query:  188 KNMGRFGLCV-ILSLCLLVATASAQSACNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 622
            + +  + LCV +L + +++A A+AQSA NVR+TYHLY+P+ I WDL AASAFCATWDA KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG LTV+YEFVNCND
Sbjct:    2 ERVNNYKLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CF836101 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.027e-57
Identity = 102/146 (69.86%), Postives = 120/146 (82.19%), Query Frame = -1
Query:  188 KNMGRFGLCV-ILSLCLLVATASAQSACNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 622
            + +  + LCV +L + +++A A+AQSA NVR+TYHLY+P+ I WDL AASAFCATWDA KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG L V+YEFVNCND
Sbjct:    2 ERVNNYKLCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CF836101 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.534e-53
Identity = 94/137 (68.61%), Postives = 111/137 (81.02%), Query Frame = -1
Query:  194 LCVILSLC-LLVATASAQSACNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 601
            LCV   +  +++A A+AQSA NVRATYHLY+P+ I WDL  AS +CATWDA KPL WR++YGWTAFC   GP GQA+CGRCLRVTN+GTG Q+ VRIVDQC NGGLDLD  VF +LDTNG+GYQ+G L V+YEFVNC
Sbjct:    7 LCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of CF836101 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.029e-49
Identity = 95/141 (67.38%), Postives = 105/141 (74.47%), Query Frame = -1
Query:  188 LCVILSLCLLVATASAQSACNVRATYHLYHPEQIGWDL--TAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 601
            + V   LC   A A+AQ A NVRATYH Y P Q  WDL   A SA+CATWDASKPL+WR KYGWTAFC   G  GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:    8 MLVAALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of CF836101 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.292e-49
Identity = 93/141 (65.96%), Postives = 106/141 (75.18%), Query Frame = -1
Query:  188 LCVILSLCLLVATASAQSACNVRATYHLYHPEQIGWDL--TAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 601
            + V+  LC   A A+AQ A NVRATYH Y P Q  WDL   A SA+CATWDASKPL+WR KYGWTAFC   G  GQA+CG+CL+VTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:    6 MLVVALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of CF836101 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.632e-48
Identity = 82/121 (67.77%), Postives = 101/121 (83.47%), Query Frame = -1
Query:  188 SACNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 550
            SA NVRATYH+Y+P+ +GWDL A SA+C+TWDA+KP AWR KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G+G QQG L V+Y+FVNC D
Sbjct:   78 SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CF836101 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.243e-47
Identity = 89/125 (71.20%), Postives = 98/125 (78.40%), Query Frame = -1
Query:  188 QSACNVRATYHLYHPEQIGWDL--TAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 553
            Q A +VRATYH Y P Q  WDL   A SA+CATWDASKPL+WR KYGWTAFC   GP GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:    1 QQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CF836101 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.816e-46
Identity = 80/121 (66.12%), Postives = 101/121 (83.47%), Query Frame = -1
Query:  188 SACNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 550
            SA NVRATYH+Y+P+ +GWDL A SA+C+TWDA+KPL+WR+KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G G  QG L V+Y+FV+C D
Sbjct:   79 SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199          
BLAST of CF836101 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.008e-45
Identity = 79/121 (65.29%), Postives = 100/121 (82.64%), Query Frame = -1
Query:  188 SACNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 550
            SA NV ATYHLY+ +  GWDL AASA+C+TWDA+KP +WR KYGWTAFC   G  GQ++CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF++LDT+G GY++G +TV+Y+FV+C D
Sbjct:   69 SASNVLATYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of CF836101 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.843e-45
Identity = 79/122 (64.75%), Postives = 94/122 (77.05%), Query Frame = -1
Query:  188 QSACNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 553
            +SA NVRATYH Y+P Q  WDL A SA+C+TWDA KP AWR KYGWTAFC   GP GQA+CG+CLRV N+ T A   VRIVDQC+NGGLDLD  +F ++DT+G GYQQG L V Y+FV+C +
Sbjct:   72 ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193          
The following BLAST results are available for this feature:
BLAST of CF836101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PR4A_TOBAC1.584e-5870.55Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC1.027e-5769.86Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC1.534e-5368.61Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WHW2_WHEAT1.029e-4967.38Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT2.292e-4965.96Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
WIN2_SOLTU9.632e-4867.77Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
BARW_HORVU6.243e-4771.20Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WIN1_SOLTU1.816e-4666.12Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
HEVE_HEVBR2.008e-4565.29Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
HEVL_ARATH5.843e-4564.75Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836101 ID=CF836101; Name=CF836101; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTAAGGGATAAAAAAAGGAAACTTTTATTCCATTACTGTAGTGC
CCATGAGCACTTCTTGATACTTCATCCCAAGTTTATTTTATTTATGAACT
AAATATATAGAGGGATAATTAATTAATAAATTAACCCTATTACAGCAATA
AGCTTCGATCGATCATGGAATTATAGATGGTGCTTTAATCATTGCAGTTC
ACAAACTCGTAGCTGACAGTAAGGAAGCCTTGTTGATAGCCTATTCCATT
GGTGTCCAATTTCTTGAACACTCCTTCGTCCAAATCTAAGCCTCCATTGG
CACACTGATCAACAATTCTCACAATTTGTTGGGCTCCTGTACCACTGTTT
GTGACCCTTAAGCACCTGCCACAAGCAGCTTGTCCAATGGGTCCGCCCGA
ATGACAGAAAGCGGTCCAGCCATATTTCTGGCGCCAGGCCAAGGGCTTGC
TGGCATCCCATGTTGCGCAGAAAGCGCTCGCTGCCGTCAAGTCCCATCCA
ATTTGCTCAGGGTGGTAGAGATGATACGTGGCTCTCACATTACAAGCACT
TTGGGCAGAAGCAGTGGCCACCAGTAGACAAAGTGACAGAATCACACAAA
GACCGAACCTCCCCATATTTTTCTCTTAATTTTTTTTAGCTTA
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