CF836103

Overview
NameCF836103
Unique NameCF836103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.861e-20
Identity = 52/82 (63.41%), Postives = 58/82 (70.73%), Query Frame = -2
Query:  594 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGR 836
            Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V NALLLN + LH R LKV+ KRTN+PGM + RGR       RGR
Sbjct:   72 QSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGR 153          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.091e-16
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = -2
Query:  567 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-----FRGR-RPNTFGF-RGRRPFIPGVPF 836
            + HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++ET   GR +KV  KRTN+PG+       FRGR R N   + RG+RP   G PF
Sbjct:  110 EAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRP--RGRPF 205          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.091e-16
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = -2
Query:  567 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-----FRGR-RPNTFGF-RGRRPFIPGVPF 836
            + HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++ET   GR +KV  KRTN+PG+       FRGR R N   + RG+RP   G PF
Sbjct:  110 EAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRP--RGRPF 205          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.830e-15
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = -2
Query:  591 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 836
            + HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NET   GRQ+KV +KRTN PG+         +F  RG R
Sbjct:  113 EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.830e-15
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = -2
Query:  591 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 836
            + HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NET   GRQ+KV +KRTN PG+         +F  RG R
Sbjct:  113 EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.614e-15
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = -2
Query:  591 HFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 830
            +FQSCGTVNR+TIL+DK  G PKG  YVEFV  +++ NA+ LN++  + RQLK++ KRTN+P   +     P   GFRG R
Sbjct:  120 YFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGR 200          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.696e-14
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  594 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM---------KQFRGRRPNTFGFRGR 836
            + HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+          ++R R  N    R R
Sbjct:  185 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTNYNSSRSR 275          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.696e-14
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  594 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMK---------QFRGRRPNTFGFRGR 836
            + HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+          ++R R  N    R R
Sbjct:  189 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSR 279          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.696e-14
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  594 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMK---------QFRGRRPNTFGFRGR 836
            + HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+          ++R R  N    R R
Sbjct:  189 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSR 279          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.696e-14
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  642 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 836
            + HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+
Sbjct:  180 EAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245          
The following BLAST results are available for this feature:
BLAST of CF836103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PAB2_SCHPO7.861e-2063.41Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
EPA2B_XENLA3.091e-1650.00Embryonic polyadenylate-binding protein 2-B OS=Xen... [more]
EPA2A_XENLA3.091e-1650.00Embryonic polyadenylate-binding protein 2-A OS=Xen... [more]
PABP2_DROPS5.830e-1550.60Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
PABP2_DROME5.830e-1550.60Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
PABP2_DICDI7.614e-1551.85Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]
PABP2_MOUSE1.696e-1447.25Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PABP2_HUMAN1.696e-1447.25Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN1.696e-1447.25Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PAB2A_XENLA1.696e-1457.58Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836103 ID=CF836103; Name=CF836103; organism=Citrus sinensis; type=EST; length=837bp
TTTTTTTTTTTTTTTAAGAACAAAAACATTGATGTTGTAGGCTTTCTTTT
CCCATGATACATGACATGGCGTCTCAGAAAATTTTCACTCGCAACACTTT
TATCTGAATAAGATCCTTGCTAGGGTTAGAATCACCGTAACTAACCTTAA
AAATGTATTGAACTAGAAAAACATGAATTCCTTGGCAGGTAAACTCAACA
ACAGTATGAACCTTAAAATGCCCAATCTAAGATCAAGAGTTCACAAATAC
ATGAAAAACATTTTTGTTACTACAACATCTGCATTTCTGCCTTTCTTCTA
TCCCTTTCCAAAGCAAGCAAATGCAGGACTTCCAAGTAAAATTAAAATCC
ATAACTGCTGCAGGCAAAGCCCTCCAGGAAGGAGCCAGTTGGCTTCCACA
TGCCAATGATGATACAAATGCTTTTTTCTTCCCCAAATTACAGATATAAT
GACACGACTGTCTAAGAATGAATTTGGACCAAGACTAACATGAGATACCA
CCATTAGTATGGCCTGTACCTCATGGGTCGTCTGAACCTTGGAATCCTTC
CATACCCATATGGAACAAAAGGAACACCAGGAATGAATGGCCTTCGACCT
CGGAAACCAAACGTGTTGGGTCGCCTTCCTCGGAATTGTTTCATACCAGG
AATGTTGGTTCGCTTAGCAGAGACCTTCAATTGTCGACCATGGAGCTCTG
TTTCATTTAACAAAAGAGCATTCTGAACAGCATCAATTTCAACAAACTCA
ACATAAGCAAATCCTTTTGGTTGACCAAACTTGTCTGTCAAAATCGTCAC
TCTGTTAACCGTTCCACAAGATTGAAAATGCTGCTGC
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