CF836107

Overview
NameCF836107
Unique NameCF836107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig444 contig Csv1_Contig444:50..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_SOLLC (Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.607e-51
Identity = 103/155 (66.45%), Postives = 123/155 (79.35%), Query Frame = -2
Query:  267 GLKAGATPARVV--GSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 725
            GLKAGA+ +  V  G++ K +A+ V +L++KA+LKDVG                 A+EVLLGGDDGSLAF+P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLN  GETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:   16 GLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 170          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS1_POPNI (Plastocyanin A, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.042e-50
Identity = 102/153 (66.67%), Postives = 115/153 (75.16%), Query Frame = -2
Query:  267 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 725
            GLKAG+     V ++ K SAS +P+LSIKA++KDVG                 AI+VLLG DDGSLAFVPS FS+S GEKIVFKNNAGFPHN+VFDED IPSGVD SKISMS EDLLN  GET+ V L+ KG YSFYCSPHQGAGMVG+VTVN
Sbjct:   16 GLKAGSASNAKVSASAKVSASPLPRLSIKASMKDVGAAVVATAASAMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN 168          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.959e-50
Identity = 104/157 (66.24%), Postives = 119/157 (75.80%), Query Frame = -2
Query:  267 GLKAGA----TPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 725
            GLKA      T A+++ +T     +AVP+LS+KA+LK+VG                 A+EVLLGG DGSLAF+P  FSV+SGE+IVFKNNAGFPHNVVFDEDEIPSGVD +KISMS EDLLN PGETY VTLTEKGTY FYCSPHQGAGMVG+VTVN
Sbjct:   17 GLKASGSIKPTTAKIIPTT-----TAVPRLSVKASLKNVGAAVVATAAAGLLAGNAMAVEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 168          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS2_POPNI (Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.274e-48
Identity = 98/153 (64.05%), Postives = 115/153 (75.16%), Query Frame = -2
Query:  267 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 725
            GLKA +     V ++ K SAS +P+LSIKA+LK+VG                 A++VLLG DDGSLAFVPS FSV +GEKIVFKNNAGFPHNV+FDED +PSGVDVSKISMS EDLLN  GET+ V L++KG Y+FYCSPHQGAGMVG+V VN
Sbjct:   16 GLKAASASNAKVSASAKVSASPLPRLSIKASLKEVGAAVVATAASAMIASNAMAVDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSGVDVSKISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIVN 168          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_SILPR (Plastocyanin, chloroplastic OS=Silene pratensis GN=PETE PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.127e-47
Identity = 98/153 (64.05%), Postives = 112/153 (73.20%), Query Frame = -2
Query:  267 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 725
            GLKA +T      +T+K  A A P++SIKA+LKDVG                 A EVLLG  DG LAFVPS  S++SGEKI FKNNAGFPHNVVFDEDE+P+GVDV+KISM  EDLLN PGE Y+VTLTEKGTY FYC+PH GAGMVG+VTVN
Sbjct:   17 GLKASSTTR---AATVKV-AVATPRMSIKASLKDVGVVVAATAAAGILAGNAMAAEVLLGSSDGGLAFVPSDLSIASGEKITFKNNAGFPHNVVFDEDEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCAPHAGAGMVGKVTVN 165          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS2_ARATH (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana GN=DRT112 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.557e-46
Identity = 95/153 (62.09%), Postives = 113/153 (73.86%), Query Frame = -2
Query:  267 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 725
            GLKA    +      ++ +A A PKL++K++LK+ G                 AIEVLLGG DGSLAF+P+ FS++ GEKIVFKNNAG+PHNVVFDEDEIPSGVDV+KISM  +DLLNG GETY V LTE GTYSFYC+PHQGAGMVG+VTVN
Sbjct:   16 GLKASTIKSSAT-VRIQTAAVASPKLTVKSSLKNFGVAAVAAAASIALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSGVDVAKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_PEA (Plastocyanin, chloroplastic OS=Pisum sativum GN=PETE PE=4 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.009e-45
Identity = 95/153 (62.09%), Postives = 105/153 (68.63%), Query Frame = -2
Query:  267 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 725
            GLK  A       + +  S S  P+L ++A+LKD G                 A+EVLLG  DG LAFVPSS  VS+GE IVFKNNAGFPHNVVFDEDEIP+GVD SKISM  EDLLN PGETY+V L  KGTY FYCSPHQGAGMVGQVTVN
Sbjct:   16 GLKTNAATKVSAMAKIPTSTSQSPRLCVRASLKDFGVALVATAASAVLASNALAVEVLLGASDGGLAFVPSSLEVSAGETIVFKNNAGFPHNVVFDEDEIPAGVDASKISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 168          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS2_TOBAC (Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.541e-45
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = -2
Query:  267 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 563
            IEVLLG DDG LAFVP +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLNGPGETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS1_ARATH (Plastocyanin minor isoform, chloroplastic OS=Arabidopsis thaliana GN=PETE PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 6.541e-45
Identity = 96/155 (61.94%), Postives = 109/155 (70.32%), Query Frame = -2
Query:  270 GLKAGATPARVVGSTMKASASAV---PKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 725
            GLK   +      ST+  S SA    PKL++K++LKD G                 A+EVLLG DDGSLAFVPS F+V+ GEKIVFKNNAGFPHNVVFDEDEIPSGVD SKISM    LLNG GETY VTLTE G+Y FYC+PHQGAGMVG++TV
Sbjct:   16 GLKLAVSSKPKTLSTISRSTSATRAPPKLALKSSLKDFGVIAVATAASIVLAGNAMAMEVLLGSDDGSLAFVPSEFTVAKGEKIVFKNNAGFPHNVVFDEDEIPSGVDASKISMDETALLNGAGETYEVTLTEPGSYGFYCAPHQGAGMVGKLTV 170          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_RUMOB (Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.903e-44
Identity = 83/98 (84.69%), Postives = 93/98 (94.90%), Query Frame = -2
Query:  270 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 563
            IE+ LGGDDG+LAFVP SF+V++GEKIVFKNNAGFPHN+VFDEDE+P+GVD SKISMS EDLLN PGETYAVTL+EKGTYSFYCSPHQGAGMVG+VTV
Sbjct:    1 IEIKLGGDDGALAFVPGSFTVAAGEKIVFKNNAGFPHNIVFDEDEVPAGVDASKISMSEEDLLNAPGETYAVTLSEKGTYSFYCSPHQGAGMVGKVTV 98          
The following BLAST results are available for this feature:
BLAST of CF836107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PLAS_SOLLC1.607e-5166.45Plastocyanin, chloroplastic OS=Solanum lycopersicu... [more]
PLAS1_POPNI1.042e-5066.67Plastocyanin A, chloroplastic OS=Populus nigra GN=... [more]
PLAS_SPIOL3.959e-5066.24Plastocyanin, chloroplastic OS=Spinacia oleracea G... [more]
PLAS2_POPNI1.274e-4864.05Plastocyanin B, chloroplastic OS=Populus nigra GN=... [more]
PLAS_SILPR9.127e-4764.05Plastocyanin, chloroplastic OS=Silene pratensis GN... [more]
PLAS2_ARATH1.557e-4662.09Plastocyanin major isoform, chloroplastic OS=Arabi... [more]
PLAS_PEA1.009e-4562.09Plastocyanin, chloroplastic OS=Pisum sativum GN=PE... [more]
PLAS2_TOBAC6.541e-4585.86Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS1_ARATH6.541e-4561.94Plastocyanin minor isoform, chloroplastic OS=Arabi... [more]
PLAS_RUMOB1.903e-4484.69Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836107 ID=CF836107; Name=CF836107; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTGAGTGGGTATAGAGTAACTATTCTCATTACTCAA
TGAAAGTCTAATGGGGCACCGATGTCTAAATTAGTTACATCACAAATCTG
CATTTGAAATAAATGGAAAATACAGAGGTTTATTGGCTTGGTTGAAGTGT
CTCACCACATAACATTCTCTCTCACCAAATGAAAATATGTATGATACTCA
TAAAATGCAAAAAGAAGAGAACGATAACCAATGAGATGAGGCAAACAAAG
TCTGAATGTGAACTTAATTAACAGTCACTTGTCCAACCATGCCAGCTCCT
TGGTGAGGGGAACAGTAGAAAGAGTAAGTGCCTTTTTCAGTCAGAGTAAC
AGCATAAGTCTCTCCAGGACCATTGAGAAGGTCTTCTGTAGACATGGAGA
TTTTTGAAACATCAACACCACTCGGAATCTCATCTTCATCGAAAACAACG
TTGTGTGGGAACCCAGCATTGTTCTTGAACACAATCTTTTCACCGGAGCT
GACAGAGAAAGAGCTTGGAACAAAAGCCAAGGACCCATCATCACCACCAA
GCAAAACCTCAATGGCCATGGCATTGCTAGCAAGCATTGCGCTGGCAGCT
GTGGCCGCAACGGCCACTCCAACATCTTTGAGTGTGGCCTTGATGCTGAG
CTTTGGGACAGCAGAGGCTGAGGCCTTCATGGTGGAACCAACAACTCTGG
CTGGTGTTGCACCGGCTTTAAGGCCGGTGAAAGTTGGGACGGTGACAGCT
GCAGAGGTGACAGTAGCCATTGTAACTGTAAATGGGGTTCTGCTGTTTTT
T
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