CF836111

Overview
NameCF836111
Unique NameCF836111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836111_ssr147 microsatellite CF836111_ssr147:147..161. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1155 contig Csv1_Contig1155:391..1236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836111 vs. ExPASy Swiss-Prot
Match: CPIN1_BOVIN (Anamorsin OS=Bos taurus GN=CIAPIN1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.552e-23
Identity = 79/233 (33.91%), Postives = 113/233 (48.50%), Query Frame = -2
Query:  253 LLEEISRVLKPGGTILIYKKLTSD--KGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEV--------------VSFGVKGKKPTWKIGSSFAIKK--APKSLAKLQVXXXXXXXXXXXXXXXXXL----------------KKPQLPSVG--DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKN-PQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFL 840
            +L E++R+L+PGG + + + + +        K  S L   L L+G ++ + +Q +S+ P E+              +S  + GKKP +++GSS  +K   A KS  K  V                                  KKP   S+    C  G  RKACKNC CG AE  EK +    + DQ+ + P+SACG+C LGDAFRC +CPY G+P FK GEKV LS + L
Sbjct:   79 ILAEMARILRPGGCLFLKEPVETAVVNNSKVKTASKLCSALTLSGLVEVKELQRESLSPEEIQSVREHLGYHSDSLLSLQITGKKPNFEVGSSSQLKLSIAKKSSGKPAVDPAAAKLWTLSANDMEDESVDLIDSDELLDAEDLKKPDPASLRAPSCGEGKKRKACKNCTCGLAEELEKEK----SRDQISSQPKSACGNCYLGDAFRCASCPYLGMPAFKPGEKVLLSDSNL 307          
BLAST of CF836111 vs. ExPASy Swiss-Prot
Match: CPIN1_HUMAN (Anamorsin OS=Homo sapiens GN=CIAPIN1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.648e-23
Identity = 80/235 (34.04%), Postives = 111/235 (47.23%), Query Frame = -2
Query:  253 QLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFG--------------VKGKKPTWKIGSSFAIK-----KAPKSL--------AKLQVXXXXXXXXXXXXXXXXXL-------KKPQLPSV--GDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFL 843
            ++L EI+R+L+PGG + + + + +  D     K  S L   L L+G ++ + +Q + + P EV S                + GKKP +++GSS  +K     K+  S+        AKL                           KKP   S+    C  G  RKACKNC CG AE  EK +       Q   P+SACG+C LGDAFRC +CPY G+P FK GEKV LS + L
Sbjct:   78 EILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPAAAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEGKKRKACKNCTCGLAEELEKEKSREQMSSQ---PKSACGNCYLGDAFRCASCPYLGMPAFKPGEKVLLSDSNL 309          
BLAST of CF836111 vs. ExPASy Swiss-Prot
Match: CPIN1_MOUSE (Anamorsin OS=Mus musculus GN=Ciapin1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.241e-22
Identity = 76/233 (32.62%), Postives = 112/233 (48.07%), Query Frame = -2
Query:  253 QLLEEISRVLKPGGTILIYKKLTSDKGDVDK--AISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFG--------------VKGKKPTWKIGSSFAIKKAPK-----------SLAKLQVXXXXXXXXXXXXXXXXXL-------KKPQLPSVG--DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFL 843
            ++L E++R+L+PGG + + + + + + + DK    S L   L L+G ++ + +Q +++ P EV S                V GKKP +++GSS  +K   K           + AKL                           K+P   S+    C  G  RKACKNC CG AE  E+ +       Q   P+SACG+C LGDAFRC  CPY G+P FK GE+V LS++ L
Sbjct:   78 EVLAEMARILRPGGCLFLKEPVETAEVNNDKMKTASKLCSALTLSGLVEIKELQREALSPEEVQSVQEHLGYHSDSLRSVRVTGKKPNFEVGSSSQLKLPNKKSSSVKPVVDPAAAKLWTLSANDMEDDSVDLIDSDELLDPEDLKRPDPASLKAPSCGEGKKRKACKNCTCGLAEELEREQSKA----QSSQPKSACGNCYLGDAFRCANCPYLGMPAFKPGEQVLLSNSNL 306          
BLAST of CF836111 vs. ExPASy Swiss-Prot
Match: YO97_CAEEL (Uncharacterized protein T20B12.7 OS=Caenorhabditis elegans GN=T20B12.7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.121e-16
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  262 GDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSS 486
            G  +    ++ACKNC CG AE EE +EK+G    +   P+S+CG+C LGDAFRC TCPY G PPFK GE V +S+
Sbjct:  164 GPDDPNKKKRACKNCSCGLAEQEE-LEKMGQIAAE---PKSSCGNCSLGDAFRCSTCPYLGQPPFKPGETVKIST 234          
BLAST of CF836111 vs. ExPASy Swiss-Prot
Match: DRE2_NEUCR (Protein dre-2 OS=Neurospora crassa GN=dre-2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.537e-14
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  259 GSTRKACKNCICG---RAEAEEKV--EKLGLTMDQLK--------------NPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSN 471
            G  R+ACK+C CG   R EAE+K   +K    ++ LK                  +CGSC LGDAFRC  CPY GLPPFK+GE+VS+ +N
Sbjct:  240 GKKRRACKDCTCGLAERLEAEDKARRDKADQALNTLKLKSEDLLELDLTVPGKTGSCGSCALGDAFRCAGCPYLGLPPFKVGEEVSILNN 329          
BLAST of CF836111 vs. ExPASy Swiss-Prot
Match: DRE2_SCHPO (Protein dre2 OS=Schizosaccharomyces pombe GN=dre2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 61/213 (28.64%), Postives = 91/213 (42.72%), Query Frame = -2
Query:  259 LLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVXXXXXXXXXXXXXXXXXLKKPQLPSVGDC--EVGSTRKACKNCICGRAEAEE--------KVEKLGLTMD---------QLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSN 840
            +L +    + PGGT+ +Y   T+D+ D      + E   LL+G+L   +       P +V +  +K      +  S   I    KS  +  +                      +  V +C  E G  ++ACKNC CG  E EE        ++E + LT           + KN  S+CG+C LGDAFRC  CPY G+P F  G+ V L+ N
Sbjct:   72 ILSQAFASVHPGGTLRVYS--TADEAD-----ESFEMTALLSGWLIESKSPWILSRPNQVEAVPIKLSNKNGQSASKNKILDFLKSDKENLISGDDDQELIDEDELLDESAHDNVLKVPECKPEPGKKKRACKNCTCGLREMEEHESSKTSAQLEAVKLTDTTEVDFTEKLKSKNAVSSCGNCYLGDAFRCSGCPYIGMPAFNPGDTVILAEN 277          
BLAST of CF836111 vs. ExPASy Swiss-Prot
Match: DRE2_COCIM (Protein DRE2 OS=Coccidioides immitis GN=DRE2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = -2
Query:  259 EVGSTRKACKNCICG------------RAEAEEKVEKLGLTMDQL-------KNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSN 477
            + G  R+ACK+C CG            RA+A+  +E + L   +L       +    +CG+C LGDAFRC  CPY GLPPFK GE+V L SN
Sbjct:  226 KAGKRRRACKDCTCGLAERLREEDKAARAKADATLETMKLAPKELAEVDFTVQGKLGSCGNCALGDAFRCDGCPYIGLPPFKPGEEVRLLSN 317          
BLAST of CF836111 vs. ExPASy Swiss-Prot
Match: DRE2_SCLS1 (Protein dre2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dre2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12
Identity = 42/104 (40.38%), Postives = 54/104 (51.92%), Query Frame = -2
Query:  259 KKP-QLPSVGDCEVGSTRKACKNCICG------------RAEAEEKVEKLGLTMDQL-------KNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSN 510
            KKP  +P       G  R+ACK+C CG            RA A+ +++ L L  D L       K    +CG+C LGDAFRC  CPY G+P FK GE+V L +N
Sbjct:  243 KKPLAIPPECAPRAGKRRRACKDCTCGLAEKLAKEDAEKRATADSQLQALKLDADDLAEVDFTVKGKVGSCGNCSLGDAFRCDGCPYIGMPAFKPGEEVRLLNN 346          
BLAST of CF836111 vs. ExPASy Swiss-Prot
Match: DRE2_YARLI (Protein DRE2 OS=Yarrowia lipolytica GN=DRE2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12
Identity = 36/80 (45.00%), Postives = 42/80 (52.50%), Query Frame = -2
Query:  268 RKACKNCICGRAEAEEKVEKLGLTMDQ---------------LKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSL 462
            RKACK+C CG  E EE+ +   L                   ++     CGSC LGDAFRC  CPY GLPPFK GE VS+
Sbjct:  195 RKACKDCTCGLKEMEEQAKDAQLAAQNTVTLSAEDTAEIDFTVQGKTGGCGSCALGDAFRCDGCPYLGLPPFKPGEAVSI 274          
BLAST of CF836111 vs. ExPASy Swiss-Prot
Match: DRE2_BOTFB (Protein dre2 OS=Botryotinia fuckeliana (strain B05.10) GN=dre2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = -2
Query:  259 KKP-QLPSVGDCEVGSTRKACKNCICG------------RAEAEEKVEKLGLTMDQL-------KNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSN 510
            KKP  +P       G  R+ACK+C CG            RA A+ +++ L L  D L       +    +CG+C LGDAFRC  CPY G+P FK GE+V L +N
Sbjct:  248 KKPLAIPPECAPRAGKRRRACKDCTCGLAEKLAKEDADKRATADSQLQALKLDADDLAEVDFTVQGKVGSCGNCSLGDAFRCDGCPYIGMPAFKPGEEVRLLNN 351          
The following BLAST results are available for this feature:
BLAST of CF836111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CPIN1_BOVIN1.552e-2333.91Anamorsin OS=Bos taurus GN=CIAPIN1 PE=2 SV=1[more]
CPIN1_HUMAN2.648e-2334.04Anamorsin OS=Homo sapiens GN=CIAPIN1 PE=1 SV=2[more]
CPIN1_MOUSE2.241e-2232.62Anamorsin OS=Mus musculus GN=Ciapin1 PE=2 SV=1[more]
YO97_CAEEL9.121e-1653.33Uncharacterized protein T20B12.7 OS=Caenorhabditis... [more]
DRE2_NEUCR8.537e-1445.56Protein dre-2 OS=Neurospora crassa GN=dre-2 PE=3 S... [more]
DRE2_SCHPO5.533e-1328.64Protein dre2 OS=Schizosaccharomyces pombe GN=dre2 ... [more]
DRE2_COCIM1.233e-1242.39Protein DRE2 OS=Coccidioides immitis GN=DRE2 PE=3 ... [more]
DRE2_SCLS12.746e-1240.38Protein dre2 OS=Sclerotinia sclerotiorum (strain A... [more]
DRE2_YARLI3.587e-1245.00Protein DRE2 OS=Yarrowia lipolytica GN=DRE2 PE=3 S... [more]
DRE2_BOTFB7.990e-1239.42Protein dre2 OS=Botryotinia fuckeliana (strain B05... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836111 ID=CF836111; Name=CF836111; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTTTTTTTAAAGGTAAATACTGTGACAAAATTTATTATCCACTTA
AATCATTGTGTTACAGATTCACGGACAACAGCCAAACCATGTAGTGGGGA
GCTAGAGTTCCCCATCGACACAATATAAATGTTCAACAATGAAAAATCAT
TTCATTTCATTAGAGCCTATAGTTAAGCAACTCCAGAAACAATCCGCCTG
ATTCTTTTCTCAGATGCATCTGCCCGAAATTTCATGTCTAAATGTCTGCT
ACGAGGAAGTTGCTTGACAGTGACACCTTCTCGCCCAGTTTGAATGGAGG
CAGACCCTTGTAAGGGCATGTACCGCAGCGGAAAGCATCGCCAAGTCCAC
AACTCCCACATGCCGACTGTGGATTCTTCAACTGATCCATAGTCAATCCC
AACTTTTCTACTTTCTCCTCTGCCTCAGCCCTACCACAAATGCAGTTTTT
GCAAGCTTTCCTTGTGCTTCCAACTTCACAATCACCAACCGATGGTAACT
GTGGTTTCTTCAAATCCTCTTCGGTTAAGAGGGTATCTTCATCAATCAAA
TCAGAATCATCATCCACCTGAAGTTTCGCTAAGCTTTTTGGAGCCTTCTT
AATAGCAAAGGATGACCCGATTTTCCATGTAGGCTTCTTACCCTTTACCC
CAAATGAAACGACTTCAGCTGGTACAACTGATTTTAGTTGAATACGTTGT
GCATCTAGAAACCCTGCTAACAGCAACTTGCCCTCAAGAGCAGAGATTGC
CTTATCGACGTCCCCTTTATCAGACGTCAATTTCTTGTAAATCAGAATTG
TCCCACCAGGCTTTAAAACTCTTGAAATTTCCTCAAGCAGCTGATCA
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