CF836118

Overview
NameCF836118
Unique NameCF836118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836118_ssr148 microsatellite CF836118_ssr148:148..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2013 contig Csv1_Contig2013:711..1433. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 7.958e-52
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKRSARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDDQWIFWVGPF+GA  AA YHQYILRA+AIKALGSFRSNA
Sbjct:  175 VYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALGSFRSNA 278          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.149e-50
Identity = 96/103 (93.20%), Postives = 97/103 (94.17%), Query Frame = -1
Query:  417 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 725
            VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDD WIFWVGPF+GA  AA YHQYILRAAAIKAL SFRSN
Sbjct:  173 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALASFRSN 275          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.960e-50
Identity = 93/103 (90.29%), Postives = 98/103 (95.15%), Query Frame = -1
Query:  417 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 725
            VYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNK++ WDD WIFWVGPF+GA  AA YHQY+LRAAAIKALGSFRSN
Sbjct:  177 VYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALGSFRSN 279          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.344e-50
Identity = 93/104 (89.42%), Postives = 98/104 (94.23%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAVIYNK+K WDD WIFWVGP +GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  187 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.703e-50
Identity = 92/104 (88.46%), Postives = 98/104 (94.23%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAV+YNK+K WDD WIFWVGP +GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  189 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALGSFRSNA 292          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.449e-50
Identity = 92/104 (88.46%), Postives = 99/104 (95.19%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSFG AVI+N +KAWDDQWI+WVGPF+GA VAA YHQYILR +AIKALGSFRSNA
Sbjct:  184 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSNA 287          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.729e-50
Identity = 95/102 (93.14%), Postives = 97/102 (95.10%), Query Frame = -1
Query:  420 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDDQWIFWVGP IGA  AAFYHQ+ILRAAAIKALGSF S
Sbjct:  182 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALGSFGS 283          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.271e-49
Identity = 94/103 (91.26%), Postives = 97/103 (94.17%), Query Frame = -1
Query:  417 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYN++KAWDD WIFW GPFIGA  AA YHQYILRAAAIKALGSFRSN
Sbjct:  177 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALGSFRSN 279          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.659e-49
Identity = 93/104 (89.42%), Postives = 98/104 (94.23%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+N EKAW + WIFWVGPF+GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  187 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.828e-49
Identity = 92/104 (88.46%), Postives = 97/104 (93.27%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNK K WDD WIFWVGPFIGA +AAFYHQ++LRA+  K+LGSFRS A
Sbjct:  182 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLGSFRSAA 285          
The following BLAST results are available for this feature:
BLAST of CF836118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
PIP27_ARATH7.958e-5293.27Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP28_ARATH1.149e-5093.20Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP1_ATRCA1.960e-5090.29Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP21_MAIZE3.344e-5089.42Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP22_MAIZE5.703e-5088.46Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP27_MAIZE7.449e-5088.46Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP24_ARATH9.729e-5093.14Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP26_ORYSJ1.271e-4991.26Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP21_ORYSJ1.659e-4989.42Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP21_ARATH4.828e-4988.46Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836118 ID=CF836118; Name=CF836118; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTTTTTTAGCAACTAAAAAAGGGCATAGTTTTATTCACTATAG
TTGGGGATTAATTAACATTAACAACATAAATACACCACTTGAAATAAAGA
AAAAGGAAAGGATAAGAAAAATATAGAGAAATAGGATATATAAAAAACAC
CACCACCACTTATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCA
AAATCCACCCTTACACATAGATAAAGCATAGGCATAAAATGCATAATGTT
CAAATATCTACAATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCC
CTCTAAAGAGCTTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTT
GCACTCCTGATCATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCA
TATTTAAAGCTTAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCT
GCTGCCCTGAGAATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAAT
GAATGGTCCAACCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGT
TGTAGATCACAGCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCG
GTGATGGGGATGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGG
GAGTGGTGCCAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGAT
CAGTGGCAGAGAAAACAGTGTAGAC
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