CF836125

Overview
NameCF836125
Unique NameCF836125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 7.514e-83
Identity = 151/192 (78.65%), Postives = 159/192 (82.81%), Query Frame = -3
Query:   92 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIXXXXXXXXXXXLGEDRLRLYTALLTSPKPNQDDFD 667
            DDLVLENICDRVKSLIFTKGE I KEGD VQRMLFVVRGHLQSSQ+L + +KSCCMLGPGNFSGDELLSWCLRRPF+ER              EAFGL+AEDVKYVTQHFRYTFV EKVKRSARYYSPGWRTWAAVA+QLAWRRYKHRLTLTSLSFI           LGED+LRLY A+LTSPKPN DDFD
Sbjct:  501 DDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLSFIRPRRPLSRCASLGEDKLRLYAAILTSPKPNPDDFD 692          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.532e-43
Identity = 86/187 (45.99%), Postives = 115/187 (61.50%), Query Frame = -3
Query:  107 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIXXXXXXXXXXXLGEDRLRLYTALLTSPKPN 667
            DDL+L+NICDR K  +F+K E I +EGDPVQRM+F++RG ++  Q L   + +   L PG + GDELLSWCLRRPF++R              EAF L +ED++Y+T HFRY F  E++KR+ARYYS  WRTWAAV IQ+AWRR + R    ++                E RL  Y A+  S +P+
Sbjct:  536 DDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPH 722          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.457e-25
Identity = 61/156 (39.10%), Postives = 90/156 (57.69%), Query Frame = -3
Query:  206 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 667
            D+ +L+ IC+R+K  + T+G  + +EGDPV  MLF++RGHL S  +        + C++GPG+F G+ELL+W L    +                EAF L+AED+++V   FR    K+ ++   R+YS  WRTWAA  IQ AWRR++ R   T L
Sbjct:  476 DERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCLIGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFVASQFRRLHTKQ-LRHKFRFYSHQWRTWAACFIQAAWRRHRKRKYKTEL 630          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.457e-25
Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = -3
Query:  203 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS 667
            DD +L+ IC+R+ S + T+G  I +EGDPV  MLF++RG L+SS          +   L PG+F G+ELL+W L                     EAF L+A D+K+V   FR    K K++ + RYYS  WRTWAA  +Q+AWRRYK +    SLS
Sbjct:  486 DDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVANQFRRLHSK-KLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLS 641          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.080e-24
Identity = 64/159 (40.25%), Postives = 89/159 (55.97%), Query Frame = -3
Query:  197 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFI 667
            DD +L+ IC+R+ S + T+G  + +EGD +  MLF++RG L+SS          +  +L PG+F G+ELLSW L                     EAF L AED+K+V   FR    K K++ + R+YS  WRTWAA  IQ AWRRYK R+   +L+ I
Sbjct:  486 DDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFRRLHSK-KLQHTFRFYSHHWRTWAACFIQAAWRRYKRRVMENNLTAI 643          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.336e-22
Identity = 61/157 (38.85%), Postives = 82/157 (52.23%), Query Frame = -3
Query:  203 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS 667
            DD +L+ IC  + S + T G  I +EGDPV  MLFV+RG ++SS      +   +   L PG+F G+ELL+W L                     EAF L AED+K+V   F+     +K++ + RYYS  WR W A  +Q AWRRYK R     LS
Sbjct:  454 DDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIESSTTNGGRSGFFNSTTLRPGDFCGEELLTWALMPNSTLNLPSSTRSVRALSEVEAFALSAEDLKFVAHQFK-RLQSKKLQHAFRYYSHQWRAWGACFVQSAWRRYKRRKLAKELS 609          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 57/150 (38.00%), Postives = 86/150 (57.33%), Query Frame = -3
Query:  224 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 667
            D+ +L+ IC+R+K  +FT+   I +EGDPV  M+F++RG L+S  +    +   +  +L  G+F G+ELL+W L                     EAF LEAE++K+V   FR    ++ V+++ R+YS  WRTWA+  IQ AWRRY  R
Sbjct:  507 DERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFRRLHSRQ-VQQTFRFYSQQWRTWASCFIQAAWRRYSRR 655          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 58/150 (38.67%), Postives = 79/150 (52.67%), Query Frame = -3
Query:  224 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQI--LHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 667
            DD +L+ IC+R+   + TK   + +EGDPV  MLF++RG ++SS      +   +   L PG+F G+ELL+W L                     EAF L AED+K+V   FR    K K++ + RYYS  WR W    IQ AWRRY  R
Sbjct:  462 DDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNSITLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFVANQFRRLHSK-KLQHAFRYYSHQWRAWGTCFIQAAWRRYMKR 610          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 57/150 (38.00%), Postives = 86/150 (57.33%), Query Frame = -3
Query:  224 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 667
            D+ +L+ IC+R+K  ++T+   I +EGDPV  MLF++RG L+S  +    +   +  +L  G+F G+ELL+W L                     EAF LEAE++K+V   FR    ++ V+++ R+YS  WRTWAA  IQ AWRR+  R
Sbjct:  513 DERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFRRLHSRQ-VQQTFRFYSQQWRTWAACFIQAAWRRHLRR 661          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 58/156 (37.18%), Postives = 86/156 (55.13%), Query Frame = -3
Query:  206 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 667
            D+ +L+ IC+R+K  +FT+   + +EGDPV  MLF++RG L+S  +    +   +  +L  G+F GDELL+W L                     EAF L A+++K+V   FR    ++ V+ + R+YS  WRTWAA  +Q AWRRY  R  L  L
Sbjct:  519 DERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRLHSRQ-VQHTFRFYSQQWRTWAACFMQAAWRRYIKRKKLEQL 673          
The following BLAST results are available for this feature:
BLAST of CF836125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNGC4_ARATH7.514e-8378.65Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNGC2_ARATH1.532e-4345.99Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNG15_ARATH2.457e-2539.10Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNG14_ARATH2.457e-2541.40Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNG17_ARATH2.080e-2440.25Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNG18_ARATH4.336e-2238.85Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNGC7_ARATH5.663e-2238.00Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNG16_ARATH1.648e-2138.67Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNGC8_ARATH2.152e-2138.00Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC6_ARATH2.152e-2137.18Probable cyclic nucleotide-gated ion channel 6 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02H08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836125 ID=CF836125; Name=CF836125; organism=Citrus sinensis; type=EST; length=669bp
GTTTTTTTACCCTTAAAGGGGNAACTCTTCCTCCGAATAAAATATGTTCC
CCTTTAAAGGTCTTCCATACGTCCTCCAACAAATTTCAGAAATCAAAATC
ATCTTGGTTAGGTTTCGGAGAAGTTAACAAAGCCGTATAAAGCCTGAGCC
TGTCCTCCCCCAACGACGAACACCGGGACAAAGGCCTTCTCGGACGTATA
AACGACAGCGAAGTGAGTGTCAACCGGTGCTTGTACCTTCTCCAAGCAAG
CTGAATAGCCACAGCTGCCCAAGTTCTCCATCCTGGAGAATAGTACCTGG
CACTTCTCTTCACTTTCTCCTTAACAAACGTGTACCTGAAATGTTGTGTC
ACATATTTCACATCTTCGGCTTCCAGGCCAAATGCCTCTGTTGTTTCCAG
GGTTATTAAAGTAGATGAAGATGGCGGTAGCCTTTCGATGAAGGGTCTCC
GAAGGCACCAGGATAGAAGCTCATCGCCACTGAAGTTTCCAGGGCCCAAC
ATGCAGCAACTTTTGATGTTGTTGTGGAGAATTTGGCTGCTTTGAAGATG
CCCTCTTACTACAAATAGCATTCTTTGTACTGGGTCACCCTCTTTTGTTA
TCACTTCACCCTTTGTAAATATGAGAGACTTCACTCGATCACAAATATTC
TCCAAAACCAAATCATCCA
back to top