CF836126

Overview
NameCF836126
Unique NameCF836126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1156 contig Csv1_Contig1156:1..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836126 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.943e-36
Identity = 88/219 (40.18%), Postives = 119/219 (54.34%), Query Frame = 2
Query:   14 VSYKESLKNHAASLGGHALDGCGEFMPSPTATSNDPASLNCAACGCHRNFHRRDPYEPNAAATHRLPPAATASHSTDPSTVPSPDTNTNSPQHHQPVTSPTPCSYYSSAPHMLLALSTGFSAPPDDGDDNXXXXXXXXXXXXXFNQVLAANSSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 670
            + Y+E LKNHA ++GGHA+DGC EFMPS    + D  +L CAACGCHRNFHR++  E      HR+P     ++   P            PQ HQP     P   + ++P      +  +  P   GD+                     +SS    KR RTKFT EQKEKML+FAERLGW++ + ++   + FC+E GV R+V K+WMHNNKN+ G+K
Sbjct:   47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLD--ALKCAACGCHRNFHRKET-ESIGGRAHRVP-----TYYNRP------------PQPHQP-----PGYLHLTSP------AAPYRPPAASGDEEDTSNP---------------SSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKK 219          
BLAST of CF836126 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 85/220 (38.64%), Postives = 118/220 (53.64%), Query Frame = 2
Query:   20 YKESLKNHAASLGGHALDGCGEFMPSPTATSNDPASLNCAACGCHRNFHRRD-PYEPNAAATHRLPPAATASHSTDPSTVPSPDTNTNSPQHHQPVTSPTPCSYY---SSAPHMLLALSTGFSAPPDDGDDNXXXXXXXXXXXXXFNQVLAANSSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGR 667
            ++E LKN A ++GGHA+DGCGEFMP+    + D  +L CAACGCHRNFHR++ PY  +A   H+ PP     +                         P P SY    S AP + LAL      PP   + +               +  +A +    +KR RTKFT EQKE+ML+ AER+GW++ R ++++ Q FC E GV R+V KVW+HNNK+  G+
Sbjct:   75 FRECLKNQAVNIGGHAVDGCGEFMPAGIEGTID--ALKCAACGCHRNFHRKELPYFHHAPPQHQPPPPPPGFYRL-----------------------PAPVSYRPPPSQAPPLQLAL------PPPQRERSEDPM-----------ETSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGK 252          
The following BLAST results are available for this feature:
BLAST of CF836126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4466_ARATH2.943e-3640.18ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
Y5541_ARATH5.550e-3538.64ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02H09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836126 ID=CF836126; Name=CF836126; organism=Citrus sinensis; type=EST; length=753bp
ACTACAAATGGTGGTTTCTTACAAAGAATCTTTGAAAAATCATGCTGCTA
GCCTTGGTGGACATGCCTTGGATGGGTGTGGTGAATTCATGCCTAGCCCC
ACCGCAACCTCTAATGATCCCGCATCCCTCAACTGCGCCGCCTGTGGCTG
TCACCGCAACTTCCACCGCCGTGACCCTTATGAACCCAACGCCGCCGCCA
CTCACCGTTTGCCTCCAGCAGCAACAGCAAGTCACAGCACAGACCCCAGC
ACGGTTCCAAGCCCAGACACAAACACAAACTCACCTCAACATCACCAGCC
AGTTACCTCACCAACTCCTTGCTCTTACTACTCATCTGCGCCCCACATGC
TGCTGGCTCTCAGCACTGGCTTCTCTGCACCGCCTGATGATGGTGATGAT
AATCATCCTCGTCATCATCATTATCCCCAGCACCAGCCTCCCTTCAATCA
AGTGCTTGCTGCAAATTCATCAGATAATGGAAAGAAGAGATCAAGAACAA
AGTTTACACAAGAGCAGAAAGAAAAAATGTTATCTTTTGCCGAAAGGCTA
GGCTGGAAGATGAACAGAGCTGAAGAGAAATTGACCCAAGATTTCTGCAG
TGAAGTTGGTGTTAGCAGACGCGTGTTCAAAGTCTGGATGCATAACAACA
AGAACGCTTCCGGGAGAAAAGATCAGAGGAGTATCAATAACAAGAACATT
AATGACATTGTCAATGGTTGCAGCAGGGTTAGTTTTGACGTCAATGGCAA
CTG
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