CF836130

Overview
NameCF836130
Unique NameCF836130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7705 contig Csv1_Contig7705:37..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.340e-48
Identity = 99/150 (66.00%), Postives = 117/150 (78.00%), Query Frame = -3
Query:  214 SSNDNKHCEEND---AMASTTTPATKAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED-MFSFLTIRNHVN-ERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPR 648
            SS+D     +N    A A+   PA KA+VVGWPPVR++RKNA+  + KFVKVAV+GAPYLRKVDLE Y  Y +LL AL+D  FS  TIR   + ERK++D VNG EYVPTYEDKDGDWMLVGDVPWKMFVE+C+R+RLMKSSEA+ LAPR
Sbjct:   49 SSSDAADAADNSSPLAAAADAPPAPKARVVGWPPVRSFRKNAL--AAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPR 196          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.860e-46
Identity = 95/156 (60.90%), Postives = 117/156 (75.00%), Query Frame = -3
Query:  211 SSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAM-------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED-MFSFLTIRNHVNER-KIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRT 651
            +S+ D+       + A+ + P+ KA+VVGWPPVRA+RKNA+           KFVKVAV+GAPYLRKVDLE Y  Y +LL+AL+D  FS  TIR   NE  K++D V+G EYVPTYEDKDGDWMLVGDVPWKMFVE+C+R+RLMKSSEA+ LAPR+
Sbjct:   56 ASATDDDPDNRLGSTATESPPSPKARVVGWPPVRAFRKNALAALAAASSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRS 211          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.043e-45
Identity = 89/153 (58.17%), Postives = 109/153 (71.24%), Query Frame = -3
Query:  187 PATKAQVVGWPPVRAYRKNAMKGSCK---------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH---------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 591
            P  KAQVVGWPPVR+YRKN M    K         FVKV+++GAPYLRK+DL +Y SY EL +AL +MFS  T+  H         +NERK++D VN  +YVP+YEDKDGDWMLVGDVPW MFV++CKR+RLMK S+AIGLAPR   K  S++
Sbjct:   77 PPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSRA 229          

HSP 2 Score: 25.409 bits (54), Expect = 6.043e-45
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = -2
Query:  656 GRKRGFLETVDLNL 697
            G KRGF ETVDL L
Sbjct:   29 GNKRGFSETVDLKL 42          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.026e-44
Identity = 92/175 (52.57%), Postives = 115/175 (65.71%), Query Frame = -3
Query:  187 NDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMK---------------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 642
            N N   +E   +   + P  KAQVVGWPPVR YRKN M                G+  FVKV+++GAPYLRKVDL++Y SY++L  AL  MFS  T+ ++        +NE K++D +N  EYVP+YEDKDGDWMLVGDVPW MFVESCKR+R+MK SEAIGLAPR   K  ++S
Sbjct:   54 NTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228          

HSP 2 Score: 25.7942 bits (55), Expect = 1.026e-44
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = -2
Query:  656 RTKAGRKRGFLETVDLNL 709
            ++  G KRGF ETVDL L
Sbjct:   24 KSGVGNKRGFSETVDLKL 41          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.112e-43
Identity = 89/172 (51.74%), Postives = 113/172 (65.70%), Query Frame = -3
Query:  187 PATKAQVVGWPPVRAYRKNAMKG-----------------------------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 591
            P  KAQVVGWPPVR++RKN M G                             +  +VKV+++GAPYLRK+DL++Y +YQ+L +AL  MFS  TI N+        +NE K+ID +NG +YVPTYEDKDGDWMLVGDVPW+MFV+SCKR+R+MK SEAIGLAPR   K  ++S
Sbjct:   65 PPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236          

HSP 2 Score: 23.483 bits (49), Expect = 1.112e-43
Identity = 11/16 (68.75%), Postives = 11/16 (68.75%), Query Frame = -2
Query:  656 KAGRKRGFLETVDLNL 703
            K   KRGF ETVDL L
Sbjct:   25 KNNGKRGFSETVDLKL 40          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.329e-43
Identity = 96/162 (59.26%), Postives = 111/162 (68.52%), Query Frame = -3
Query:  187 ATKAQVVGWPPVRAYRKNAM-----KG----------------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRN-------HVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 588
            A KAQVVGWPPVR+YRKN +     KG                +  FVKV+++GAPYLRKVDL++Y SY EL  ALE MFS  TI N        +NE KI D +NG EYVPTYEDKDGDWMLVGDVPW+MFVESCKR+R+MK SEAIGLAPR   K  ++S
Sbjct:  116 APKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.469e-42
Identity = 91/173 (52.60%), Postives = 114/173 (65.90%), Query Frame = -3
Query:  187 ASTTTPATKAQVVGWPPVRAYRKNAMKGS-----------------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI----------RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 606
            +S T PA+KAQVVGWPP+R++RKN+M  S                       C +VKV++EGAPYLRK+DL+ Y SY EL SALE MFS  TI          R+ +NE ++ D + G EYV TYEDKD DWMLVGDVPW+MF+ SCK++R+MKSSEAIGLAPR   K  S++
Sbjct:  133 SSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.682e-42
Identity = 87/172 (50.58%), Postives = 108/172 (62.79%), Query Frame = -3
Query:  202 EENDAMASTTTPATKAQVVGWPPVRAYRKNAMK-----------------------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAK 624
            +E   +   + P  KAQVVGWPPVR YRKN M                             VKV+++GAPYLRKVDL++Y SYQ+L  AL  MFS  T+ N+        +NE K+++ +N  EYVP+YEDKDGDWMLVGDVPW+MFVESCKR+R+MK SEA+GLAPR   K
Sbjct:   66 KEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237          

HSP 2 Score: 25.0238 bits (53), Expect = 7.682e-42
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = -2
Query:  656 RTKAGRKRGFLETVDLNL 709
            ++  G KRGF ETVDL L
Sbjct:   29 KSAVGSKRGFSETVDLML 46          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.770e-41
Identity = 87/143 (60.84%), Postives = 102/143 (71.33%), Query Frame = -3
Query:  202 ASTTTPATKAQVVGWPPVRAYRKNAMK---GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRN----HVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAK 606
            A    P+ KA+ VGWPPVRAYR+NA++      K VKVAV+GAPYLRKVDL  +  Y  LL AL  MF S L +R          K++D V G EYVPTYEDKDGDWMLVGDVPWKMFVESCKR+RLMKSSEA+ L+PR  ++
Sbjct:   51 ADAKPPSPKARAVGWPPVRAYRRNALREDSARAKLVKVAVDGAPYLRKVDLAAHAGYAPLLRALHGMFASCLAVRGGGGGDGEGTKLVDLVTGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKSSEAVNLSPRRSSR 193          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.000e-40
Identity = 84/175 (48.00%), Postives = 115/175 (65.71%), Query Frame = -3
Query:  187 EENDAMASTTTPATKAQVVGWPPVRAYRKN-------AMKGS------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI----------RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 624
            EE +       PA KAQVVGWPP+R+YRKN       A+KG             C +VKV+++GAPYLRKVDL++Y +Y+EL  ALE MFS  T+          R+ +++ +++D  NG E V TYEDKD DWMLVGDVPW+MF +SC+R+R+MK S+A+GLAPR   K+ +++
Sbjct:   92 EEEEEKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266          
The following BLAST results are available for this feature:
BLAST of CF836130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA1_ORYSJ2.340e-4866.00Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA15_ORYSJ2.860e-4660.90Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA17_ARATH6.043e-4558.17Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA14_ARATH1.026e-4452.57Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA16_ARATH1.112e-4351.74Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA30_ORYSJ1.329e-4359.26Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA27_ARATH1.469e-4252.60Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA7_ARATH7.682e-4250.58Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA23_ORYSJ2.770e-4160.84Auxin-responsive protein IAA23 OS=Oryza sativa sub... [more]
IAA21_ORYSJ4.000e-4048.00Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02H13_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836130 ID=CF836130; Name=CF836130; organism=Citrus sinensis; type=EST; length=716bp
GGGAGCAGGGCTCTCTTATTTCTCTAACCTTAAATGATCAAAATCTGATC
GTCAAAACTCTCCTAAGAAAACACAGTGGTGTGTACTAAAATTCAAATCA
ATCCAAAGCCTCTGTACAGCCATTAATTGTCACTCCAGGAATGCCTCCTT
ATACAATAAGGCCCTTATTCTGTTATTCATTCTTCAACTCTTGCTTGAAT
TTTTTGCAGGTGTTCTTGGAGCTAACCCAATTGCTTCTGAGCTTTTCATC
AACCTTACTCGCTTGCAAGATTCAACAAACATTTTCCATGGCACATCTCC
AACTAACATCCAATCTCCATCTTTGTCTTCATAAGTAGGTACATATTCAA
CTCCATTTACATTATCTATAATCTTTCTCTCATTTACGTGGTTCCTTATA
GTCAAGAATGAGAACATATCCTCTAAAGCACTCAAGAGTTCTTGATAACT
ATGGTATATCTCAAGGTCAACTTTTCTTAGATATGGAGCTCCTTCAACTG
CCACCTTTACAAATTTGCAGCTGCCCTTCATAGCATTTTTCCGATATGCT
CTCACCGGCGGCCACCCCACCACTTGTGCCTTGGTTGCTGGGGTTGTAGT
CGAGGCCATTGCATCGTTCTCTTCGCAATGTTTGTTATCGTTGCTTGAGC
TCCATGAGGTTTAGATCAACGGTCTCTAAGAAGCCACGCTTCCTGCCGGC
TTTCGTCCGGTGACAC
back to top