CF836131

Overview
NameCF836131
Unique NameCF836131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836131_ssr118 microsatellite CF836131_ssr118:118..129. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7347 contig Csv1_Contig7347:17..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.396e-48
Identity = 99/150 (66.00%), Postives = 117/150 (78.00%), Query Frame = 2
Query:  200 SSNDNKHCEEND---AMASTTTPATKAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED-MFSFLTIRNHVN-ERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPR 634
            SS+D     +N    A A+   PA KA+VVGWPPVR++RKNA+  + KFVKVAV+GAPYLRKVDLE Y  Y +LL AL+D  FS  TIR   + ERK++D VNG EYVPTYEDKDGDWMLVGDVPWKMFVE+C+R+RLMKSSEA+ LAPR
Sbjct:   49 SSSDAADAADNSSPLAAAADAPPAPKARVVGWPPVRSFRKNAL--AAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPR 196          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.396e-48
Identity = 104/205 (50.73%), Postives = 129/205 (62.93%), Query Frame = 2
Query:  140 RTKAGTKRGFLETVDLNLMSSSNDNKHCE--------ENDAMASTTTPATKAQVVGWPPVRAYRKNAMK---------------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 661
            ++  G KRGF ETVDL L   SN   H +        E   +   + P  KAQVVGWPPVR YRKN M                G+  FVKV+++GAPYLRKVDL++Y SY++L  AL  MFS  T+ ++        +NE K++D +N  EYVP+YEDKDGDWMLVGDVPW MFVESCKR+R+MK SEAIGLAPR   K  ++S
Sbjct:   24 KSGVGNKRGFSETVDLKLNLQSNKQGHVDLNTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.902e-47
Identity = 104/201 (51.74%), Postives = 129/201 (64.18%), Query Frame = 2
Query:  152 GTKRGFLETVDLNLM----------SSSNDNKHCEENDAMASTTTPA---TKAQVVGWPPVRAYRKNAMKGSCK---------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH---------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 661
            G KRGF ETVDL L           S+++D    +  +  A    PA    KAQVVGWPPVR+YRKN M    K         FVKV+++GAPYLRK+DL +Y SY EL +AL +MFS  T+  H         +NERK++D VN  +YVP+YEDKDGDWMLVGDVPW MFV++CKR+RLMK S+AIGLAPR   K  S++
Sbjct:   29 GNKRGFSETVDLKLNLNNEPANKEGSTTHDVVTFDSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSRA 229          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.902e-47
Identity = 104/212 (49.06%), Postives = 133/212 (62.74%), Query Frame = 2
Query:  146 KAGTKRGFLETVDL--NLMSSSNDNKHCEENDAMASTTT-PATKAQVVGWPPVRAYRKNAMKG-----------------------------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 661
            K   KRGF ETVDL  NL S++ D+    + + M      P  KAQVVGWPPVR++RKN M G                             +  +VKV+++GAPYLRK+DL++Y +YQ+L +AL  MFS  TI N+        +NE K+ID +NG +YVPTYEDKDGDWMLVGDVPW+MFV+SCKR+R+MK SEAIGLAPR   K  ++S
Sbjct:   25 KNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.929e-46
Identity = 95/156 (60.90%), Postives = 117/156 (75.00%), Query Frame = 2
Query:  197 SSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAM-------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED-MFSFLTIRNHVNER-KIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRT 637
            +S+ D+       + A+ + P+ KA+VVGWPPVRA+RKNA+           KFVKVAV+GAPYLRKVDLE Y  Y +LL+AL+D  FS  TIR   NE  K++D V+G EYVPTYEDKDGDWMLVGDVPWKMFVE+C+R+RLMKSSEA+ LAPR+
Sbjct:   56 ASATDDDPDNRLGSTATESPPSPKARVVGWPPVRAFRKNALAALAAASSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRS 211          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.230e-45
Identity = 102/209 (48.80%), Postives = 127/209 (60.77%), Query Frame = 2
Query:  140 RTKAGTKRGFLETVDLNLMSSSN-----DNKHC----EENDAMASTTTPATKAQVVGWPPVRAYRKNAMK-----------------------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAK 646
            ++  G+KRGF ETVDL L   SN     D K+     +E   +   + P  KAQVVGWPPVR YRKN M                             VKV+++GAPYLRKVDL++Y SYQ+L  AL  MFS  T+ N+        +NE K+++ +N  EYVP+YEDKDGDWMLVGDVPW+MFVESCKR+R+MK SEA+GLAPR   K
Sbjct:   29 KSAVGSKRGFSETVDLMLNLQSNKEGSVDLKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.361e-43
Identity = 96/162 (59.26%), Postives = 111/162 (68.52%), Query Frame = 2
Query:  260 ATKAQVVGWPPVRAYRKNAM-----KG----------------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRN-------HVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 661
            A KAQVVGWPPVR+YRKN +     KG                +  FVKV+++GAPYLRKVDL++Y SY EL  ALE MFS  TI N        +NE KI D +NG EYVPTYEDKDGDWMLVGDVPW+MFVESCKR+R+MK SEAIGLAPR   K  ++S
Sbjct:  116 APKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.504e-42
Identity = 91/173 (52.60%), Postives = 114/173 (65.90%), Query Frame = 2
Query:  242 ASTTTPATKAQVVGWPPVRAYRKNAMKGS-----------------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI----------RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 661
            +S T PA+KAQVVGWPP+R++RKN+M  S                       C +VKV++EGAPYLRK+DL+ Y SY EL SALE MFS  TI          R+ +NE ++ D + G EYV TYEDKD DWMLVGDVPW+MF+ SCK++R+MKSSEAIGLAPR   K  S++
Sbjct:  133 SSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.837e-41
Identity = 87/143 (60.84%), Postives = 102/143 (71.33%), Query Frame = 2
Query:  242 ASTTTPATKAQVVGWPPVRAYRKNAMK---GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRN----HVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAK 646
            A    P+ KA+ VGWPPVRAYR+NA++      K VKVAV+GAPYLRKVDL  +  Y  LL AL  MF S L +R          K++D V G EYVPTYEDKDGDWMLVGDVPWKMFVESCKR+RLMKSSEA+ L+PR  ++
Sbjct:   51 ADAKPPSPKARAVGWPPVRAYRRNALREDSARAKLVKVAVDGAPYLRKVDLAAHAGYAPLLRALHGMFASCLAVRGGGGGDGEGTKLVDLVTGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKSSEAVNLSPRRSSR 193          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.408e-40
Identity = 90/210 (42.86%), Postives = 124/210 (59.05%), Query Frame = 2
Query:  146 KAGTKRGFLETVDLNLMSSSNDNK---------HCEENDAMASTTTPATKAQVVGWPPVRAYRKN-------AMKGS------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI----------RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAKNSSKS 661
            K G KRGF + +         +             EE +       PA KAQVVGWPP+R+YRKN       A+KG             C +VKV+++GAPYLRKVDL++Y +Y+EL  ALE MFS  T+          R+ +++ +++D  NG E V TYEDKD DWMLVGDVPW+MF +SC+R+R+MK S+A+GLAPR   K+ +++
Sbjct:   57 KGGAKRGFADAIVGGPAGQRREAAGGKAAAAAAEAEEEEEKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266          
The following BLAST results are available for this feature:
BLAST of CF836131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA1_ORYSJ2.396e-4866.00Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA14_ARATH2.396e-4850.73Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA17_ARATH5.902e-4751.74Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA16_ARATH5.902e-4749.06Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA15_ORYSJ2.929e-4660.90Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA7_ARATH4.230e-4548.80Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA30_ORYSJ1.361e-4359.26Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA27_ARATH1.504e-4252.60Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA23_ORYSJ2.837e-4160.84Auxin-responsive protein IAA23 OS=Oryza sativa sub... [more]
IAA21_ORYSJ1.408e-4042.86Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836131 ID=CF836131; Name=CF836131; organism=Citrus sinensis; type=EST; length=726bp
TTTTGTTAACCCATATAACCACATAGCAAAGCAAAATTTGGCAACCTTAG
ACCTAATGACACCGGAAAAAGTTAATCATTTGCCGGAATCCGACACGAAG
CTCACGTTAGGCTTACCCGGCGGCGGCGGCGAGTGTCACCGGACGAAAGC
CGGCACGAAGCGTGGCTTCTTAGAGACCGTTGATCTAAACCTCATGAGCT
CAAGCAACGATAACAAACATTGCGAAGAGAACGATGCAATGGCCTCGACT
ACAACCCCAGCAACCAAGGCACAAGTGGTGGGGTGGCCGCCGGTGAGAGC
ATATCGGAAAAATGCTATGAAGGGCAGCTGCAAATTTGTAAAGGTGGCAG
TTGAAGGAGCTCCATATCTAAGAAAAGTTGACCTTGAGATATACCATAGT
TATCAAGAACTCTTGAGTGCTTTAGAGGATATGTTCTCATTCTTGACTAT
AAGGAACCACGTAAATGAGAGAAAGATTATAGATAATGTAAATGGAGTTG
AATATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTAGTTGGA
GATGTGCCATGGAAAATGTTTGTTGAATCTTGCAAGCGAGTAAGGTTGAT
GAAAAGCTCAGAAGCAATTGGGTTAGCTCCAAGAACACCTGCAAAAAATT
CAAGCAAGAGTTGAAGAATGAATAACAGAATAAGGGGCTTATTGTATAAG
GAGGCATTCCTGGAGTGACAATTAAT
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