CF836134

Overview
NameCF836134
Unique NameCF836134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836134 vs. ExPASy Swiss-Prot
Match: PUB6_ARATH (U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.177e-32
Identity = 78/123 (63.41%), Postives = 90/123 (73.17%), Query Frame = -1
Query:  195 IEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGHQDDDSSEKLKPTYTPTPDHAPES--KPLCKSISRRK-MGKAFSFLWKSKSYSV 554
            +EQEQAVSCL +LC G+E C QMVLQEGVIP+LVSISVNGS RGRDK+Q+LLMLFREQR RD P  +   ++        P   P P  APES  KPL KSISRRK M + FSFLWK KS+S+
Sbjct:  650 VEQEQAVSCLVILCTGSESCIQMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFREQRHRDQPSPN--KEEAPRKTVSAPMAIPAPVSAPESEVKPLTKSISRRKTMTRPFSFLWK-KSHSI 769          
BLAST of CF836134 vs. ExPASy Swiss-Prot
Match: PUB45_ARATH (U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.974e-30
Identity = 70/121 (57.85%), Postives = 88/121 (72.73%), Query Frame = -1
Query:  189 EQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGHQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 551
            EQEQAVS L +LCN +E C +MVLQEGVIP+LVSISVNG+ RGR++AQ+LL LFRE RQRD   +      + +S   +  ++       E+KP CKS SR+KMG+AFSFLWKSKS+SV Q
Sbjct:  649 EQEQAVSLLLILCNHSEICSEMVLQEGVIPSLVSISVNGTQRGRERAQKLLTLFRELRQRDQTHLTEPQHTEVTSP--EDGFSVASAAVTETKPQCKSASRKKMGRAFSFLWKSKSFSVYQ 767          
BLAST of CF836134 vs. ExPASy Swiss-Prot
Match: PUB7_ARATH (U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.356e-27
Identity = 73/132 (55.30%), Postives = 87/132 (65.91%), Query Frame = -1
Query:  189 EQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ--------RDHPPVDIGHQDDDSSEKLKPTYTPTPDHAPESKP--LCKSISRRK-MGKAFSFLWKSKSYSVSQ 551
            EQEQAVSCL +LCNG E C QMVLQEGVIP+LVSISVNG+ RGR+K+Q+LLMLFRE+RQ        RD PP     +   S+       TP      + +P  L KS+SRRK M + FSF WK KSYSV +
Sbjct:  652 EQEQAVSCLLILCNGRESCIQMVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQRDQPSSNRDEPPQKEPARKSLSAPLSVHGSTPASASVQDYEPRVLSKSMSRRKSMARPFSFFWK-KSYSVRE 782          
The following BLAST results are available for this feature:
BLAST of CF836134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB6_ARATH3.177e-3263.41U-box domain-containing protein 6 OS=Arabidopsis t... [more]
PUB45_ARATH2.974e-3057.85U-box domain-containing protein 45 OS=Arabidopsis ... [more]
PUB7_ARATH2.356e-2755.30U-box domain-containing protein 7 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02H15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836134 ID=CF836134; Name=CF836134; organism=Citrus sinensis; type=EST; length=554bp
AATGGATGGCCTCCCTTTAAAAAGGTGAAGACAAGGAAACTAAACCAAAA
TCCATTGATTACAAGGGCTGTACATCTCTTCTCTACCACTAACAAGAAAT
AAATTATGCCCGCGGTAGCGGGACAGAAAAGGAAATAGAAAAGAAAATAC
CGGGAAAATTTACCAAGGTAAGGGCGCCTATGTTAATACTGGGAAACTGA
ATAGCTCTTGCTCTTCCACAAGAAGCTAAAAGCTTTTCCCATCTTTCTTC
TTGATATAGATTTACATAGAGGCTTTGATTCTGGAGCATGGTCGGGAGTG
GGAGTATATGTTGGTTTCAGCTTCTCACTACTATCATCATCTTGGTGTCC
GATATCAACAGGGGGATGATCCCGTTGCCTCTGCTCCCGAAATAGCATCA
AAAGTCTCTGTGCCTTGTCTCTCCCTCTTGTACTCCCATTCACTGAAATC
GACACAAGTGCAGGAATGACCCCTTCTTGTAGAACCATTTGACAACATTT
CTCATTCCCGTTACACAAAAGGAAAAGACATGAAACAGCTTGCTCCTGCT
CAAT
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