CF836138

Overview
NameCF836138
Unique NameCF836138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836138 vs. ExPASy Swiss-Prot
Match: SGAT_ARATH (Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 3.945e-88
Identity = 154/177 (87.01%), Postives = 169/177 (95.48%), Query Frame = -2
Query:  185 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 715
            +KS++VFFDW DY+KFY LGT+WPYTPSIQLLYGLRAALDLIFEEGLEN+I RH RLGKATRLAVEAWGLKNCTQKEEW S+TVTAV+VPPHI+ SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG++NELQLLGCLAGVEMILKDVGYPV +GSGVAAAS YLQ++IP+IPSRI
Sbjct:  225 SKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401          
BLAST of CF836138 vs. ExPASy Swiss-Prot
Match: SGAA_METEA (Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=sgaA PE=3 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.569e-50
Identity = 100/165 (60.61%), Postives = 123/165 (74.55%), Query Frame = -2
Query:  209 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 703
            RV+FDW+D  K    G F PYTP + LLYGLR AL  +FEEGLENV  RH  LG+ATR AV AWGLK C +  EW SDTVTA++ P  +++++I++ A+ RYNL+LG GL++VAGKVFRIGH+G LNEL LLG +AG EM L D G  V  GSGVAAAS+YL+ N
Sbjct:  234 RVYFDWEDQKKQNPTGYF-PYTPPLPLLYGLREALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSPEWNSDTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEMSLIDNGVKVTPGSGVAAASSYLREN 397          
BLAST of CF836138 vs. ExPASy Swiss-Prot
Match: SGAA_HYPME (Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.677e-46
Identity = 93/165 (56.36%), Postives = 118/165 (71.52%), Query Frame = -2
Query:  209 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 703
            R FF ++D IK  + G F+PYTP+ QLL GLR +LDL+F EGL+NV  RH RL    R AV+AWGLK C ++ +W+SDTV+A++VP  I+S+ I + A+ RYN S GLGLNKVAGKVFRIGHLG L+E+ + G L   EM LKD G  +KLGSG  AA+ Y   N
Sbjct:  226 RCFFSFEDMIKTNDQG-FFPYTPATQLLRGLRTSLDLLFAEGLDNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYSDTVSAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEMALKDNGVNLKLGSGTGAAAEYFSKN 389          
BLAST of CF836138 vs. ExPASy Swiss-Prot
Match: Y959_METJA (Uncharacterized aminotransferase MJ0959 OS=Methanocaldococcus jannaschii GN=MJ0959 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.608e-26
Identity = 70/163 (42.94%), Postives = 94/163 (57.67%), Query Frame = -2
Query:  218 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYL 706
            V  + D   Y K+Y      PYTPS+ L Y L  ALDL+ EEG+EN ++RH RL KATR  +EA G++    KE   S TVT+   P  I  S+       +YN+ +  G   +AGK+FRIGH+G   E ++L  LA VE+ LK++G+ VK  SGV  A   L
Sbjct:  222 VGFYLDLLAYKKYYEEKKQTPYTPSVNLTYALNVALDLVLEEGIENRVKRHERLAKATRAGLEAMGIE-LFAKERARSVTVTSAKYPEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGEKEVLATLACVELALKELGFEVK-ESGVEVAKEVL 382          
BLAST of CF836138 vs. ExPASy Swiss-Prot
Match: DHSS_SYNP1 (Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 51/144 (35.42%), Postives = 87/144 (60.42%), Query Frame = -2
Query:  218 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYP-VKLGSGVAAASAYL 646
            P+TP + L + L+ AL+++  EGLE + +RH+RL +ATR A++A  L      +   S  +TAV  P  + +  I     +R++++L  G + + G++FRIGHLG + +  +L  ++ +E +L ++GY     G+GVAAAS  L
Sbjct:  240 PFTPPVNLFFALKTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNLP-LYAADSCASPAITAV-APQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVSALEAVLAELGYTNFTPGAGVAAASRVL 381          
BLAST of CF836138 vs. ExPASy Swiss-Prot
Match: DHSS_ANACY (Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 55/169 (32.54%), Postives = 95/169 (56.21%), Query Frame = -2
Query:  212 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYP-VKLGSGVAAASAYLQN 715
            AK  + + D   Y K     T  P+TP + L+  L   L ++ +EGLE++  RH R   ATR A++A  L      +E  S  +TAV  P  + + +I     +R++++L  G + ++ K+FR+GHLG +++  +L C+A +E++L ++G+     G+GVAAA+    N
Sbjct:  218 AKLPKYYLDLGKYRKATAKNTT-PFTPPVNLMVALHTTLGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADECASPAITAVATPG-MEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLEVVLLELGHENFNSGAGVAAAARVFSN 383          
The following BLAST results are available for this feature:
BLAST of CF836138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SGAT_ARATH3.945e-8887.01Serine--glyoxylate aminotransferase OS=Arabidopsis... [more]
SGAA_METEA5.569e-5060.61Serine--glyoxylate aminotransferase OS=Methylobact... [more]
SGAA_HYPME1.677e-4656.36Serine--glyoxylate aminotransferase OS=Hyphomicrob... [more]
Y959_METJA5.608e-2642.94Uncharacterized aminotransferase MJ0959 OS=Methano... [more]
DHSS_SYNP11.252e-1735.42Soluble hydrogenase, small subunit OS=Synechococcu... [more]
DHSS_ANACY1.252e-1732.54Soluble hydrogenase 42 kDa subunit OS=Anabaena cyl... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02H17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836138 ID=CF836138; Name=CF836138; organism=Citrus sinensis; type=EST; length=716bp
AAATACTTGGGTGGACCCTTAAACGTTTCAAGTACATCACAATACAAGAA
GCAATGCCCTTAAGGAGAGTTTTCTCGGTGAGCCTCTAATAAGAGCAAGC
ATAGGAAATTTTACATTCTTTGTACATAGTGACCTGAAGCGCGTGAATAG
AAGAGAAGTAATTACATTGATGAAAGATGACTCAGATCCTGGATGGGATC
ATAGGAATGTTGTTCTGTAGGTATGCAGAAGCAGCTGCAACCCCGCTTCC
CAGCTTAACCGGGTAGCCCACGTCTTTTAGTATCATCTCCACACCAGCGA
GACAGCCCAACAATTGCAACTCATTCAGGTGGCCGAGATGCCCGATTCTA
AATACTTTACCAGCAACTTTGTTAAGGCCCAGACCTAAGCTTAGATTGTA
TCTCTGCCATGCCCTTCTAACAATTTCTGAACTATTGATATGTGGAGGAA
CAATCACAGCAGTCACGGTGTCACTGAACCATTCTTCTTTCTGGGTGCAG
TTCTTTAATCCCCATGCCTCCACCGCAAGCCTGGTTGCTTTGCCCAAACG
ACGGTGCCTTTCGATCACATTTTCAAGCCCTTCCTCAAAAATCAGATCCA
AAGCTGCTCGCAGCCCATACAGCAGTTGGATGGAAGGGGTATATGGCCAA
AATGTTCCCAAATTGTAAAACTTTATGTAGTCTTTCCAATCAAAGAAAAC
TCTGACAGATTTTGCA
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