CF836139

Overview
NameCF836139
Unique NameCF836139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10785 contig Csv1_Contig10785:125..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836139 vs. ExPASy Swiss-Prot
Match: SGAT_ARATH (Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2)

HSP 1 Score: 373.244 bits (957), Expect = 7.256e-103
Identity = 179/206 (86.89%), Postives = 193/206 (93.69%), Query Frame = 3
Query:   87 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP 704
            MDYMY PG++HLFVPGPV+IP+ VIRAMNRNNEDYRSPA+PALTK LLEDVKKIFKTTSGTPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQ+RLNFNVDVVESDWG+GA L VLASKL+ D  HTIKAICIVHNETATGVTN++S VR LLD Y+HPAL LVDGVSSICA+DFRMDEWG+DVALTGSQKALSLP
Sbjct:    1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLP 206          
BLAST of CF836139 vs. ExPASy Swiss-Prot
Match: SGAA_METEA (Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=sgaA PE=3 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.790e-62
Identity = 115/200 (57.50%), Postives = 145/200 (72.50%), Query Frame = 3
Query:  105 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP 704
            PG+NHLFVPGP +IPD+V+RAM   +ED+RS   P+LTK L ED KK+F +T GT FL P +GTG WESAL+NTL+ GD++++   GQFS LWID  QRL  +V V E +WG GAK + +   L AD  H IKA+ +VHNETATGVT+N+  VRK +D   HPAL  VDGVSSI ++ F+ DEW +D A+ GSQK L LP
Sbjct:    7 PGRNHLFVPGPTNIPDRVMRAMMVQSEDHRSVDFPSLTKPLFEDTKKVFGSTEGTIFLFPASGTGIWESALSNTLARGDKVLAARFGQFSHLWIDMAQRLGLDVVVQEEEWGTGAKPEKIEEALRADKNHEIKAVMVVHNETATGVTSNIGAVRKAIDAAGHPALLFVDGVSSIGSLPFKADEWKVDCAIAGSQKGLMLP 206          
BLAST of CF836139 vs. ExPASy Swiss-Prot
Match: SGAA_HYPME (Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 8.692e-56
Identity = 102/196 (52.04%), Postives = 135/196 (68.88%), Query Frame = 3
Query:  117 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP 704
            HLF+PGP +IPD V  AMN   ED RSP  P  T  L ED+KK FK   G  F+ P++GTGAWESA+ NTL+ GD+++    GQFSLLW+D  +RL   V+V + +WG G  ++  A  LA D  H IKA+ + HNETATGV+++++ VRK LD  +HPAL +VDGVSS+ ++D RM EWG+D  ++GSQK   LP
Sbjct:    6 HLFIPGPTNIPDAVRMAMNIPMEDMRSPEFPKFTLPLFEDLKKAFKMKDGRVFIFPSSGTGAWESAVENTLATGDKVLMSRFGQFSLLWVDMCERLGLKVEVCDEEWGTGVPVEKYADILAKDKNHEIKAVFVTHNETATGVSSDVAGVRKALDAAKHPALLMVDGVSSVGSLDMRMGEWGVDCCVSGSQKGFMLP 201          
BLAST of CF836139 vs. ExPASy Swiss-Prot
Match: DHSS_ANACY (Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28
Identity = 67/195 (34.36%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  120 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP 704
            L +PGP  +P+  + A+ ++   +R+     +   + +++K + +T S    ++  +GTGA E+ + N LSPGDRI+    G+F   W++  Q    NV+ + ++WG+    D  A KL ADT   IKA+ I H+ET+TGV N+L  +   + E+   AL +VD V+S+ A +  +D  G+DV  +GSQK   +P
Sbjct:    7 LMIPGPTPVPEAALLALAKHPIGHRTSEFSNMMGEVTQNLKWLHQTESDV-LMLNVSGTGAVEAGMINFLSPGDRILVGSNGKFGERWVEVGQAFGLNVEAITAEWGQPLDPDKFAQKLQADTNKEIKAVIITHSETSTGVINDLVAINSHVKEHGQ-ALIIVDAVTSLGAYNVPVDALGLDVVASGSQKGYMIP 199          
BLAST of CF836139 vs. ExPASy Swiss-Prot
Match: Y959_METJA (Uncharacterized aminotransferase MJ0959 OS=Methanocaldococcus jannaschii GN=MJ0959 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 64/198 (32.32%), Postives = 113/198 (57.07%), Query Frame = 3
Query:  111 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP 704
            K  L +PGP  +P +V+ AM      +R+     L +  +E +KK+F T + T FLI  +GT A + A++N +  GD++++ + G F   + +  +        ++ +WG+ A+ +  A K   D    IKA+ +VHNET+TG  N + ++ +++ +Y   AL++VD VSS+      +D++ ID+ +TGSQK L+ P
Sbjct:    7 KKLLMIPGPTMVPPEVLNAMALPVIGHRTKDYSNLLEDTIEKLKKVFITENDT-FLITGSGTAAMDMAISNIIKRGDKVLNIVTGNFGERFANIVKAYKGEAIRLDVEWGDMAEPE--AVKEILDKYDDIKAVTVVHNETSTGARNPIKEIGEVVKDY--DALYIVDTVSSLGGDYVNVDKFHIDICVTGSQKCLAAP 199          
BLAST of CF836139 vs. ExPASy Swiss-Prot
Match: DHSS_SYNP1 (Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 57/198 (28.79%), Postives = 103/198 (52.02%), Query Frame = 3
Query:  111 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP 704
            K  L +PGP  +P+ V+ ++ ++   +RS     +   +   +K + +T +    ++  +GTGA E+ + N LS GDR++    G+F   W +         + + + WG+    D   + L        KA+ + H+ET+TGV N+L  + + +  +   AL +VD V+S+ A+   +DEWG+DV  +GSQK   +P
Sbjct:    4 KAMLMIPGPTPVPESVLLSLGKHPIGHRSGEFSQIMAAMTAGIKWLHQTQNEV-LILAASGTGAMEAGIINFLSAGDRVVVGCNGKFGDRWGEVCDAYGLTTERISAPWGQPLNPDDFKAVLDGHRQKPSKAVIVTHSETSTGVINDLEAINRHVKAHGQ-ALIIVDAVTSLGAVSVPIDEWGLDVVGSGSQKGYMIP 199          
BLAST of CF836139 vs. ExPASy Swiss-Prot
Match: AGX1_YEAST (Alanine--glyoxylate aminotransferase 1 OS=Saccharomyces cerevisiae GN=AGX1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.981e-19
Identity = 57/202 (28.22%), Postives = 107/202 (52.97%), Query Frame = 3
Query:  120 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGT---PFLIPTTGTGAWESALTNTL---SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP 704
            L +PGP+ +   V +A++  +  + SP   ++ + +L++ + +FK+ + +   PF++  +GT  W+   +N +   +P   ++    G FS  + D  +     VDVV     GE   L+++  KL+ ++     A+ + H +T+T V ++L  + + + +      F+VD V SI   +F  DEWG+D ALT SQKA+  P
Sbjct:    8 LLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNS---YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAP 206          
BLAST of CF836139 vs. ExPASy Swiss-Prot
Match: PUCG_BACSU (Purine catabolism protein pucG OS=Bacillus subtilis GN=pucG PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.508e-18
Identity = 54/195 (27.69%), Postives = 99/195 (50.77%), Query Frame = 3
Query:  120 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP 704
            +  PGPV +  +V+R M+        PA   +    +E ++++F+T +   + I  T     E+ L + + P D ++  + G+F  L  +  +R   NV ++E +WG     + +  ++        K + +VH ET+TG  + L  + +        ALF+VD V++I   + ++DEW ID A+ G+QK LS+P
Sbjct:   14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKP---KIVAMVHGETSTGRIHPLKAIGEAC--RTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVP 203          
BLAST of CF836139 vs. ExPASy Swiss-Prot
Match: SPYA_DICDI (Serine--pyruvate aminotransferase OS=Dictyostelium discoideum GN=agxt PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 54/195 (27.69%), Postives = 95/195 (48.72%), Query Frame = 3
Query:  120 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP 704
            L  PGP ++  +V + +  +   Y   +   +    +E ++ +F+T +     I   GT A E+ ++N + PGD+++  + G FS        R   N+  V+  WG+   L+ + S L     H    + +V  ET+TGV   +  V +L  +Y    L +VD V+++  +   +D+W ID   TG+QK LS P
Sbjct:   21 LLGPGPSNLHPRVNQQLISSMVGYTDASYYKVMDETMELMRYLFQTDNHFTIPISGAGTAAMETCVSNLIEPGDKVVCLVSGFFSDRIYQMAVRYGGNILKVDKQWGQWFALEEIESAL---VQHKPSLLTLVFGETSTGVKQQMEGVGELCKKYN--CLLMVDCVAALGGVPVFVDDWKIDACYTGTQKCLSGP 210          
BLAST of CF836139 vs. ExPASy Swiss-Prot
Match: SPYA_HUMAN (Serine--pyruvate aminotransferase OS=Homo sapiens GN=AGXT PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 61/199 (30.65%), Postives = 95/199 (47.74%), Query Frame = 3
Query:  120 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLW----IDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP 704
            L  PGP ++P +++ A         S  +  +   + E ++ +F+T +    +I  +G  A E+AL N L PGD   SFL+G   + W    +D  +R+   V  +  D G    L  +   LA    H    + + H E++TGV   L    +L   Y+   L LVD V+S+      MD  GID+  +GSQKAL+ P
Sbjct:   25 LLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGD---SFLVGANGI-WGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQ---HKPVLLFLTHGESSTGVLQPLDGFGELCHRYK--CLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAP 214          
The following BLAST results are available for this feature:
BLAST of CF836139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SGAT_ARATH7.256e-10386.89Serine--glyoxylate aminotransferase OS=Arabidopsis... [more]
SGAA_METEA2.790e-6257.50Serine--glyoxylate aminotransferase OS=Methylobact... [more]
SGAA_HYPME8.692e-5652.04Serine--glyoxylate aminotransferase OS=Hyphomicrob... [more]
DHSS_ANACY7.667e-2834.36Soluble hydrogenase 42 kDa subunit OS=Anabaena cyl... [more]
Y959_METJA3.334e-2332.32Uncharacterized aminotransferase MJ0959 OS=Methano... [more]
DHSS_SYNP12.161e-2228.79Soluble hydrogenase, small subunit OS=Synechococcu... [more]
AGX1_YEAST4.981e-1928.22Alanine--glyoxylate aminotransferase 1 OS=Saccharo... [more]
PUCG_BACSU5.508e-1827.69Purine catabolism protein pucG OS=Bacillus subtili... [more]
SPYA_DICDI6.733e-1627.69Serine--pyruvate aminotransferase OS=Dictyostelium... [more]
SPYA_HUMAN3.694e-1430.65Serine--pyruvate aminotransferase OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836139 ID=CF836139; Name=CF836139; organism=Citrus sinensis; type=EST; length=706bp
TCCTCTTCGGCCTTTAAGTTTGGAGTGGTGAAACAACAAGAACTCGTCAA
CCTTTAAGGTATCAGTGACATTCCAAGTAGGGAAAGATGGACTATATGTA
TGCACCAGGGAAGAACCATCTCTTTGTTCCGGGTCCTGTTCACATCCCCG
ATCAAGTCATCCGAGCAATGAATAGGAACAATGAGGACTACCGTTCTCCA
GCAGTTCCAGCATTAACAAAAATTCTTCTTGAGGATGTCAAGAAAATTTT
CAAGACCACTTCTGGAACTCCATTTCTGATCCCAACCACAGGAACTGGTG
CATGGGAGAGTGCACTTACAAACACACTGTCTCCTGGAGATCGCATTATC
TCTTTTCTGATTGGTCAATTCAGTTTGCTTTGGATTGATCAGCAGCAGCG
CCTCAACTTCAACGTTGATGTCGTCGAAAGTGACTGGGGTGAAGGTGCAA
AGCTTGATGTTTTGGCATCAAAACTTGCAGCAGATACTGCACACACTATC
AAGGCCATTTGCATTGTTCATAACGAGACAGCGACCGGAGTTACCAACAA
CTTGTCTAAAGTGAGAAAACTTCTTGATGAATACAGGCACCCGGCTCTTT
TTCTCGTTGACGGGGTTTCCTCCATTTGTGCCATCGATTTCCGTATGGAT
GAATGGGGCATAGATGTGGCTCTAACTGGCTCTCAGAAAGCTCTTTCACT
TCCTAC
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