CF836141

Overview
NameCF836141
Unique NameCF836141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836141_ssr21 microsatellite CF836141_ssr21:21..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF836141 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.879e-16
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  335 RVAVDEVDFFSDDKNRVSISDHREDDRNKTTNSVHIKKENSHDQLRHRTGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTKI 598
            RV VDEVDFFS+ ++RVS  +  +DD     N V IK E S  +   R+  DVN GL+LLTA NTGSD+STVDDG+S D  ++KR KI
Sbjct:   27 RVVVDEVDFFSEKRDRVSRENINDDDDEG--NKVLIKMEGSRVEENDRSR-DVNIGLNLLTA-NTGSDESTVDDGLSMD-MEDKRAKI 109          

HSP 2 Score: 31.5722 bits (70), Expect = 1.879e-16
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  642 KNQRLRDMLSQVTNNYN 692
            +NQRLRDMLSQ T N+N
Sbjct:  124 ENQRLRDMLSQATTNFN 140          
BLAST of CF836141 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.544e-14
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  335 RVAVDEVDFFSDDKNRVSISDHREDDRNKTTNSVHIKKENSH-DQLRHRTGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTK 595
            R  V+EVDFF   + R  +S   ++     T+ VH+K+ENS  D    R+   +N GL+LLT ANTGSD+S VDDG+S D  +EKRTK
Sbjct:   25 RAVVNEVDFFRSAEKRDRVSREEQNIIADETHRVHVKRENSRVDDHDDRSTDHINIGLNLLT-ANTGSDESMVDDGLSVD-MEEKRTK 110          

HSP 2 Score: 30.4166 bits (67), Expect = 3.544e-14
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  639 QKNQRLRDMLSQVTNNYN 692
            + NQRL+ MLSQ TNN+N
Sbjct:  125 EDNQRLKQMLSQTTNNFN 142          
The following BLAST results are available for this feature:
BLAST of CF836141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRK31_ARATH1.879e-1654.55Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRK42_ARATH3.544e-1447.73Probable WRKY transcription factor 42 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02H18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836141 ID=CF836141; Name=CF836141; organism=Citrus sinensis; type=EST; length=694bp
AGGCAACGTCATTAACCCAACTCTCTCTCTCTCTCTCGATTCGTTCCACT
TTCTCTTCTAAATCTTCCCTTCTTTTGCTTTTGCTTTTGCTTAATTAACT
TTCTTCAATTTAATTATATTTATGGACAAAGGATGGGGTCTCACACTTGA
TTCTGATCATCCTATTGTTAGTAATCTGAATTTCTTCACAAGCAACAAGC
CAAAGCCATCATTAGCAAGGTTTAGAACAAACCGTGACATGGCTGCTTCT
GGTGCTGCTGACTCAGCTTCTGTCAGAATGTTTCAGCTTCCGGCCTCCGA
CAATAGTAATGCTCCCTCCTCGTCTGATGATAATCGGGTGGCTGTTGATG
AAGTTGACTTCTTTTCCGATGACAAGAACAGGGTTTCTATCTCTGATCAT
CGTGAAGATGATCGTAACAAGACAACAAATTCTGTTCACATCAAGAAAGA
GAATTCTCACGACCAACTTCGTCACAGAACTGGCTTGGATGTTAATACTG
GCTTGCATCTACTTACTGCCGCTAACACTGGAAGCGATCAATCAACGGTT
GATGATGGGGTTTCATCTGATCATGCGGACGAGAAACGAACAAAAATTGA
GTTGACTCAATTGCAAATGGAGCTGCAACAAATGAATACAGAAAAATCAA
AGGTTAAGAGACATGCTTAGCCAAGTAACTAACAATTACAATGC
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