CF836142

Overview
NameCF836142
Unique NameCF836142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836142_ssr587 microsatellite CF836142_ssr587:587..600. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5157 contig Csv1_Contig5157:78..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.903e-67
Identity = 121/141 (85.82%), Postives = 129/141 (91.49%), Query Frame = -3
Query:  164 METAKNVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 586
            M T K VKDVSPH+FVKAYA+H KRSGKIELPTW DIVKTG LKELAPYDPDWYYIRAASMARK+YLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG +ARHIL QL+  NI+ELD+KGGRRITSSGQRDLDQVAGRIAV
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQVAGRIAV 141          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.441e-66
Identity = 121/140 (86.43%), Postives = 127/140 (90.71%), Query Frame = -3
Query:  167 METAKNVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 586
            M T K VKDVSPHEFVKAYAAH KRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARK+YLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG VARHIL QLQ  NI++LD+KGGR+ITSSGQRDLDQVAGRIA
Sbjct:    1 MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRIA 140          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.220e-65
Identity = 119/140 (85.00%), Postives = 127/140 (90.71%), Query Frame = -3
Query:  167 METAKNVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 586
            M T K VKDVSPH+FVKAYA+H KRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARKIYLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG +ARHIL QL+  +I+ELD+KGGRRITSSGQRDLDQVAGRIA
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQVAGRIA 140          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.549e-55
Identity = 101/139 (72.66%), Postives = 118/139 (84.89%), Query Frame = -3
Query:  164 TAKNVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 580
            TA+ VKDV+PHEFVKAY+AH KRSGK+ELP W DIVKT   KEL PYDPDWYY RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHF KSSG+++R+IL QLQ   II++D KGGR ITS G+RDLDQVAGR+ V
Sbjct:    5 TARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDV 143          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.506e-43
Identity = 75/135 (55.56%), Postives = 104/135 (77.04%), Query Frame = -3
Query:  167 NVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 571
            +VKDVS HEF +A+AA  K+SGK+++P W D VKTG  KEL+PY+PDWY+IRAAS+ R +Y+R   G+GSF +IYGG +R G+ P HF K++GS++R +L  L+   I+E D  GGRR+TS G+RDLD++A +IA
Sbjct:    4 SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTSQGRRDLDRIAAQIA 138          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.513e-42
Identity = 78/137 (56.93%), Postives = 106/137 (77.37%), Query Frame = -3
Query:  158 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 568
            VKDV+  EFVKA AA FK+SGK++ P W D VK G  KELAP+D DWYYIR AS+AR +Y+RGG+GVG+  +IYGG +RNG+RP H+S+ S +VAR +L  L+   ++E D  GGRR+TS GQRD+D++AG++ V++
Sbjct:    6 VKDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLTSIGQRDMDRIAGQVVVLS 142          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_BRABE (40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.736e-41
Identity = 77/134 (57.46%), Postives = 103/134 (76.87%), Query Frame = -3
Query:  167 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 568
            VKDV+  EFVKA+AA  K+SGK++LP W D+VKT   KELAPYDPDW+Y+RAAS AR +Y+RGG+GVG+  +IYGG KR G++P  F   S  V+R +L  L+   ++E D+ GGRR+TS GQRDLD++AG++A
Sbjct:    7 VKDVNQQEFVKAFAAFLKKSGKLKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKDAAGGRRLTSQGQRDLDRIAGQVA 140          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_RAT (40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 3.951e-40
Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = -3
Query:  167 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 568
            VKDV+  EFV+A AA  K+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG RP HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_MOUSE (40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 3.951e-40
Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = -3
Query:  167 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 568
            VKDV+  EFV+A AA  K+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG RP HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_PONAB (40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.961e-39
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = -3
Query:  167 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 568
            VKDV+  EFV+A AA  K+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
The following BLAST results are available for this feature:
BLAST of CF836142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS191_ARATH2.903e-6785.8240S ribosomal protein S19-1 OS=Arabidopsis thalian... [more]
RS193_ARATH1.441e-6686.4340S ribosomal protein S19-3 OS=Arabidopsis thalian... [more]
RS192_ARATH1.220e-6585.0040S ribosomal protein S19-2 OS=Arabidopsis thalian... [more]
RS19_ORYSJ2.549e-5572.6640S ribosomal protein S19 OS=Oryza sativa subsp. j... [more]
RS19_MYAAR8.506e-4355.5640S ribosomal protein S19 OS=Mya arenaria GN=RPS19... [more]
RS19_MYXGL5.513e-4256.9340S ribosomal protein S19 OS=Myxine glutinosa GN=r... [more]
RS19_BRABE2.736e-4157.4640S ribosomal protein S19 OS=Branchiostoma belcher... [more]
RS19_RAT3.951e-4057.4640S ribosomal protein S19 OS=Rattus norvegicus GN=... [more]
RS19_MOUSE3.951e-4057.4640S ribosomal protein S19 OS=Mus musculus GN=Rps19... [more]
RS19_PONAB1.961e-3956.7240S ribosomal protein S19 OS=Pongo abelii GN=RPS19... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836142 ID=CF836142; Name=CF836142; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTAATATGAAAAAGAATATTCATCTCTATAAAATCTTAGGGTACTA
ACAGAGAACTGAAAATCCCCTTAAAAGGCTTTCTATCTACTACTCCCATT
CAAACAACTAACTCAATAACATCAATCCTTTTGAAAGCTTGAGCTAATCC
CTCAAGGGGCAACAACTGCAATCCGTCCAGCAACTTGATCAAGATCCCGC
TGCCCACTGGATGTGATTCTCCTTCCACCCTTGGAGTCAAGCTCGATGAT
GTTCGTGTCCTGCAATTGGTGAAGTATGTGACGAGCAACAGAGCCACTGC
TCTTGCTGAAATGAGGTGGGCGGCTACCGTTCCTCTTCCCCCCTCCATAG
ATTCTACGGAAGGAACCAACACCAAGACCACCCCTCAAGTAAATCTTCCT
CGCCATTGAAGCAGCCCTGATATAGTACCAATCGGGGTCATAAGGGGCTA
GCTCCTTCAACGTTCCAGTCTTGACGATGTCGTTCCAAGTAGGAAGCTCA
ATCTTGCCGGAGCGCTTGAAATGGGCGGCGTAGGCCTTGACGAACTCGTG
GGGAGAGACGTCCTTCACGTTTTTTGCAGTCTCCATTCTCTCTCTCTCTC
AGTCTGTGCTTCAGCGGC
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