CF836143

Overview
NameCF836143
Unique NameCF836143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5157 contig Csv1_Contig5157:110..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.759e-67
Identity = 121/141 (85.82%), Postives = 129/141 (91.49%), Query Frame = 3
Query:    3 METAKNAKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 425
            M T K  KDVSPH+FVKAYA+HLKRSGKIELPTW DIVKTG LKELAPYDPDWYYIRAASMARK+YLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG +ARHIL QL+  NI+ELD+KGGRRITSSGQRDLDQVAGRIAV
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQVAGRIAV 141          
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.369e-66
Identity = 121/140 (86.43%), Postives = 127/140 (90.71%), Query Frame = 3
Query:    3 METAKNAKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            M T K  KDVSPHEFVKAYAAHLKRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARK+YLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG VARHIL QLQ  NI++LD+KGGR+ITSSGQRDLDQVAGRIA
Sbjct:    1 MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRIA 140          
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.159e-65
Identity = 119/140 (85.00%), Postives = 127/140 (90.71%), Query Frame = 3
Query:    3 METAKNAKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            M T K  KDVSPH+FVKAYA+HLKRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARKIYLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG +ARHIL QL+  +I+ELD+KGGRRITSSGQRDLDQVAGRIA
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQVAGRIA 140          
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.422e-55
Identity = 101/139 (72.66%), Postives = 118/139 (84.89%), Query Frame = 3
Query:    9 TAKNAKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 425
            TA+  KDV+PHEFVKAY+AHLKRSGK+ELP W DIVKT   KEL PYDPDWYY RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHF KSSG+++R+IL QLQ   II++D KGGR ITS G+RDLDQVAGR+ V
Sbjct:    5 TARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDV 143          
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.082e-43
Identity = 75/135 (55.56%), Postives = 104/135 (77.04%), Query Frame = 3
Query:   18 NAKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            + KDVS HEF +A+AA LK+SGK+++P W D VKTG  KEL+PY+PDWY+IRAAS+ R +Y+R   G+GSF +IYGG +R G+ P HF K++GS++R +L  L+   I+E D  GGRR+TS G+RDLD++A +IA
Sbjct:    4 SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTSQGRRDLDRIAAQIA 138          
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_BRABE (40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.600e-41
Identity = 77/133 (57.89%), Postives = 103/133 (77.44%), Query Frame = 3
Query:   24 KDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            KDV+  EFVKA+AA LK+SGK++LP W D+VKT   KELAPYDPDW+Y+RAAS AR +Y+RGG+GVG+  +IYGG KR G++P  F   S  V+R +L  L+   ++E D+ GGRR+TS GQRDLD++AG++A
Sbjct:    8 KDVNQQEFVKAFAAFLKKSGKLKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKDAAGGRRLTSQGQRDLDRIAGQVA 140          
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.565e-41
Identity = 76/136 (55.88%), Postives = 104/136 (76.47%), Query Frame = 3
Query:   24 KDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 431
            KDV+  EFVKA AA  K+SGK++ P W D VK G  KELAP+D DWYYIR AS+AR +Y+RGG+GVG+  +IYGG +RNG+RP H+S+ S +VAR +L  L+   ++E D  GGRR+TS GQRD+D++AG++ V++
Sbjct:    7 KDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLTSIGQRDMDRIAGQVVVLS 142          
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_RAT (40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 3.754e-40
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 3
Query:   24 KDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            KDV+  EFV+A AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG RP HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    7 KDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_MOUSE (40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 3.754e-40
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 3
Query:   24 KDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            KDV+  EFV+A AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG RP HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    7 KDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_PONAB (40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.863e-39
Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 3
Query:   24 KDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            KDV+  EFV+A AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    7 KDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
The following BLAST results are available for this feature:
BLAST of CF836143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS191_ARATH2.759e-6785.8240S ribosomal protein S19-1 OS=Arabidopsis thalian... [more]
RS193_ARATH1.369e-6686.4340S ribosomal protein S19-3 OS=Arabidopsis thalian... [more]
RS192_ARATH1.159e-6585.0040S ribosomal protein S19-2 OS=Arabidopsis thalian... [more]
RS19_ORYSJ2.422e-5572.6640S ribosomal protein S19 OS=Oryza sativa subsp. j... [more]
RS19_MYAAR8.082e-4355.5640S ribosomal protein S19 OS=Mya arenaria GN=RPS19... [more]
RS19_BRABE2.600e-4157.8940S ribosomal protein S19 OS=Branchiostoma belcher... [more]
RS19_MYXGL7.565e-4155.8840S ribosomal protein S19 OS=Myxine glutinosa GN=r... [more]
RS19_RAT3.754e-4057.8940S ribosomal protein S19 OS=Rattus norvegicus GN=... [more]
RS19_MOUSE3.754e-4057.8940S ribosomal protein S19 OS=Mus musculus GN=Rps19... [more]
RS19_PONAB1.863e-3957.1440S ribosomal protein S19 OS=Pongo abelii GN=RPS19... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836143 ID=CF836143; Name=CF836143; organism=Citrus sinensis; type=EST; length=599bp
GAATGGAGACTGCAAAAAACGCGAAGGACGTCTCTCCCCACGAGTTCGTC
AAGGCCTACGCCGCCCATCTCAAGCGCTCCGGCAAGATTGAGCTTCCTAC
TTGGAACGACATCGTCAAGACTGGAACGTTGAAGGAGCTAGCCCCTTATG
ACCCCGATTGGTACTATATCAGGGCTGCTTCAATGGCGAGGAAGATCTAC
TTGAGGGGTGGTCTTGGTGTTGGTTCCTTCCGTAGAATCTATGGAGGGGG
GAAGAGGAACGGTAGCCGCCCACCTCATTTCAGCAAGAGCAGTGGCTCTG
TTGCTCGTCACATACTTCACCAATTGCAGGACACGAACATCATCGAGCTT
GACTCCAAGGGTGGAAGGAGAATCACATCCAGTGGGCAGCGGGATCTTGA
TCAAGTTGCTGGACGGATTGCAGTTGTTGCCCCTTGAGGGATTAGCTCAA
GCTTTCAAAAGGATTGATGTTATTGAGTTAGTTGTTTGAATGGGAGTAGT
AGATAGAAAGCATCGTTAGTTGATTTTCAGTTCTCTGTTAGTAACCTAAG
ATGAATTGATAATGAATATTCTTTTTCATATTTAAAAAAAAAAAAAAAA
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