CF836143
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 2.759e-67 Identity = 121/141 (85.82%), Postives = 129/141 (91.49%), Query Frame = 3 Query: 3 METAKNAKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 425 M T K KDVSPH+FVKAYA+HLKRSGKIELPTW DIVKTG LKELAPYDPDWYYIRAASMARK+YLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG +ARHIL QL+ NI+ELD+KGGRRITSSGQRDLDQVAGRIAV Sbjct: 1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQVAGRIAV 141
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 1.369e-66 Identity = 121/140 (86.43%), Postives = 127/140 (90.71%), Query Frame = 3 Query: 3 METAKNAKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422 M T K KDVSPHEFVKAYAAHLKRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARK+YLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG VARHIL QLQ NI++LD+KGGR+ITSSGQRDLDQVAGRIA Sbjct: 1 MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRIA 140
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 1.159e-65 Identity = 119/140 (85.00%), Postives = 127/140 (90.71%), Query Frame = 3 Query: 3 METAKNAKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422 M T K KDVSPH+FVKAYA+HLKRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARKIYLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG +ARHIL QL+ +I+ELD+KGGRRITSSGQRDLDQVAGRIA Sbjct: 1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQVAGRIA 140
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 2.422e-55 Identity = 101/139 (72.66%), Postives = 118/139 (84.89%), Query Frame = 3 Query: 9 TAKNAKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 425 TA+ KDV+PHEFVKAY+AHLKRSGK+ELP W DIVKT KEL PYDPDWYY RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHF KSSG+++R+IL QLQ II++D KGGR ITS G+RDLDQVAGR+ V Sbjct: 5 TARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDV 143
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 8.082e-43 Identity = 75/135 (55.56%), Postives = 104/135 (77.04%), Query Frame = 3 Query: 18 NAKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422 + KDVS HEF +A+AA LK+SGK+++P W D VKTG KEL+PY+PDWY+IRAAS+ R +Y+R G+GSF +IYGG +R G+ P HF K++GS++R +L L+ I+E D GGRR+TS G+RDLD++A +IA Sbjct: 4 SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTSQGRRDLDRIAAQIA 138
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_BRABE (40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 2.600e-41 Identity = 77/133 (57.89%), Postives = 103/133 (77.44%), Query Frame = 3 Query: 24 KDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422 KDV+ EFVKA+AA LK+SGK++LP W D+VKT KELAPYDPDW+Y+RAAS AR +Y+RGG+GVG+ +IYGG KR G++P F S V+R +L L+ ++E D+ GGRR+TS GQRDLD++AG++A Sbjct: 8 KDVNQQEFVKAFAAFLKKSGKLKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKDAAGGRRLTSQGQRDLDRIAGQVA 140
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 7.565e-41 Identity = 76/136 (55.88%), Postives = 104/136 (76.47%), Query Frame = 3 Query: 24 KDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 431 KDV+ EFVKA AA K+SGK++ P W D VK G KELAP+D DWYYIR AS+AR +Y+RGG+GVG+ +IYGG +RNG+RP H+S+ S +VAR +L L+ ++E D GGRR+TS GQRD+D++AG++ V++ Sbjct: 7 KDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLTSIGQRDMDRIAGQVVVLS 142
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_RAT (40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3) HSP 1 Score: 164.466 bits (415), Expect = 3.754e-40 Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 3 Query: 24 KDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422 KDV+ EFV+A AA LK+SGK+++P W D VK KELAPYD +W+Y RAAS AR +YLRGG GVGS +IYGG +RNG RP HFS+ S SVAR +L L+ ++E D GGR++T GQRDLD++AG++A Sbjct: 7 KDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_MOUSE (40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3) HSP 1 Score: 164.466 bits (415), Expect = 3.754e-40 Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 3 Query: 24 KDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422 KDV+ EFV+A AA LK+SGK+++P W D VK KELAPYD +W+Y RAAS AR +YLRGG GVGS +IYGG +RNG RP HFS+ S SVAR +L L+ ++E D GGR++T GQRDLD++AG++A Sbjct: 7 KDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139
BLAST of CF836143 vs. ExPASy Swiss-Prot
Match: RS19_PONAB (40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3) HSP 1 Score: 162.155 bits (409), Expect = 1.863e-39 Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 3 Query: 24 KDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422 KDV+ EFV+A AA LK+SGK+++P W D VK KELAPYD +W+Y RAAS AR +YLRGG GVGS +IYGG +RNG P HFS+ S SVAR +L L+ ++E D GGR++T GQRDLD++AG++A Sbjct: 7 KDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139 The following BLAST results are available for this feature:
BLAST of CF836143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836143 ID=CF836143; Name=CF836143; organism=Citrus sinensis; type=EST; length=599bpback to top |