CF836161

Overview
NameCF836161
Unique NameCF836161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 398.667 bits (1023), Expect = 2.022e-110
Identity = 194/237 (81.86%), Postives = 203/237 (85.65%), Query Frame = -2
Query:   94 RQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIXXXXXXXXXXXLGEDRLRLYTALLTSPKPNQDDFD 804
            RQRWAAMRGVDECEM+ NLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGE I KEGD VQRMLFVVRGHLQSSQ+L + +KSCCMLGPGNFSGDELLSWCLRRPF+ER              EAFGL+AEDVKYVTQHFRYTFV EKVKRSARYYSPGWRTWAAVA+QLAWRRYKHRLTLTSLSFI           LGED+LRLY A+LTSPKPN DDFD
Sbjct:  456 RQRWAAMRGVDECEMVQNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLSFIRPRRPLSRCASLGEDKLRLYAAILTSPKPNPDDFD 692          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.615e-61
Identity = 114/232 (49.14%), Postives = 150/232 (64.66%), Query Frame = -2
Query:  109 RQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIXXXXXXXXXXXLGEDRLRLYTALLTSPKPN 804
            RQRW A+ G DE E+I +LP GLRRDIK +LC DL+ +VPLF+ MDDL+L+NICDR K  +F+K E I +EGDPVQRM+F++RG ++  Q L   + +   L PG + GDELLSWCLRRPF++R              EAF L +ED++Y+T HFRY F  E++KR+ARYYS  WRTWAAV IQ+AWRR + R    ++                E RL  Y A+  S +P+
Sbjct:  491 RQRWNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPH 722          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.528e-41
Identity = 92/200 (46.00%), Postives = 121/200 (60.50%), Query Frame = -2
Query:  205 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS 798
            +W A RGVDE  ++ +LP  LRRDI+ HLCLDLVR+VPLF  MDD +L+ IC+R+ S + T+G  I +EGDPV  MLF++RG L+SS          +   L PG+F G+ELL+W L                     EAF L+A D+K+V   FR    K K++ + RYYS  WRTWAA  +Q+AWRRYK +    SLS
Sbjct:  443 KWLATRGVDEETILHSLPADLRRDIQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVANQFRRLHSK-KLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLS 641          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.995e-41
Identity = 88/199 (44.22%), Postives = 122/199 (61.31%), Query Frame = -2
Query:  208 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 798
            +W A RGVDE  ++ +LP  LRRDIK HLC DLVR+VPLF  MD+ +L+ IC+R+K  + T+G  + +EGDPV  MLF++RGHL S  +        + C++GPG+F G+ELL+W L    +                EAF L+AED+++V   FR    K+ ++   R+YS  WRTWAA  IQ AWRR++ R   T L
Sbjct:  433 KWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCLIGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFVASQFRRLHTKQ-LRHKFRFYSHQWRTWAACFIQAAWRRHRKRKYKTEL 630          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.206e-40
Identity = 90/202 (44.55%), Postives = 121/202 (59.90%), Query Frame = -2
Query:  199 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFI 798
            +W A RGVDE  ++ +LP  LRRDI+ HLCLDLVR+VP F  MDD +L+ IC+R+ S + T+G  + +EGD +  MLF++RG L+SS          +  +L PG+F G+ELLSW L                     EAF L AED+K+V   FR    K K++ + R+YS  WRTWAA  IQ AWRRYK R+   +L+ I
Sbjct:  443 KWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFRRLHSK-KLQHTFRFYSHHWRTWAACFIQAAWRRYKRRVMENNLTAI 643          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.697e-38
Identity = 85/199 (42.71%), Postives = 120/199 (60.30%), Query Frame = -2
Query:  208 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 798
            +W   RGVDE  ++ NLP+ LRRDIK HLCL LVR+VPLF++MD+ +L+ IC+R+K  +FT+   + +EGDPV  MLF++RG L+S  +    +   +  +L  G+F GDELL+W L                     EAF L A+++K+V   FR    ++ V+ + R+YS  WRTWAA  +Q AWRRY  R  L  L
Sbjct:  476 KWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRLHSRQ-VQHTFRFYSQQWRTWAACFMQAAWRRYIKRKKLEQL 673          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.522e-38
Identity = 83/199 (41.71%), Postives = 121/199 (60.80%), Query Frame = -2
Query:  208 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 798
            +W   RGVDE  ++ NLP+ LRRDIK HLCL LVR+VPLF++MD+ +L+ IC+R+K  ++T+   + +EGDPV  MLF++RG L+S  +    +   +  +L  G+F G+ELL+W L                     EAF L A+++K+V   FR    ++ V+ + R+YS  WRTWAA+ IQ AWRRY  +  L  L
Sbjct:  475 KWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFVASQFRRLHSRQ-VQHTFRFYSQQWRTWAAIFIQAAWRRYVKKKKLEQL 672          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.522e-38
Identity = 83/193 (43.01%), Postives = 120/193 (62.18%), Query Frame = -2
Query:  226 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 798
            +W   RGVDE  ++ +LP+ LRRDIK HLCL+LVR+VPLF +MD+ +L+ IC+R+K  +FT+   I +EGDPV  M+F++RG L+S  +    +   +  +L  G+F G+ELL+W L                     EAF LEAE++K+V   FR    ++ V+++ R+YS  WRTWA+  IQ AWRRY  R
Sbjct:  464 KWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFRRLHSRQ-VQQTFRFYSQQWRTWASCFIQAAWRRYSRR 655          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.338e-37
Identity = 83/193 (43.01%), Postives = 120/193 (62.18%), Query Frame = -2
Query:  226 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 798
            +W   RGVDE  ++ +LP+ LRRDIK HLCL+LVR+VPLF +MD+ +L+ IC+R+K  ++T+   I +EGDPV  MLF++RG L+S  +    +   +  +L  G+F G+ELL+W L                     EAF LEAE++K+V   FR    ++ V+++ R+YS  WRTWAA  IQ AWRR+  R
Sbjct:  470 KWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFRRLHSRQ-VQQTFRFYSQQWRTWAACFIQAAWRRHLRR 661          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.086e-37
Identity = 82/192 (42.71%), Postives = 119/192 (61.98%), Query Frame = -2
Query:  235 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCM----LGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRY 798
            +W   RGVDE  ++SNLP+ LRRDIK HLCL L+ +VP+F+ MD+ +L+ +CDR++ +++T+   I +EGDPV  MLF++RG L +  I  N  ++  +    LG G+F G+ELL+W L                     EAF L+A+D+K+V   FR    K+ ++ + RYYS  W+TWAA  IQ AWRRY
Sbjct:  448 KWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLT--ITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQ-LRHTFRYYSQQWKTWAACFIQAAWRRY 636          
The following BLAST results are available for this feature:
BLAST of CF836161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNGC4_ARATH2.022e-11081.86Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNGC2_ARATH8.615e-6149.14Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNG14_ARATH1.528e-4146.00Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNG15_ARATH1.995e-4144.22Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNG17_ARATH2.206e-4044.55Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNGC6_ARATH2.697e-3842.71Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC9_ARATH3.522e-3841.71Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC7_ARATH3.522e-3843.01Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC8_ARATH1.338e-3743.01Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC1_ARATH5.086e-3742.71Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02I07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836161 ID=CF836161; Name=CF836161; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTAGCCGTATCTTGGTAACTCTTCCTCCGAATAAAATATGTTC
CAGCTACAAAGTTCTTCCATACGTCCTCCAACAAATTTCAGAAATCAAAA
TCATCTTGGTTAGGTTTCGGAGAAGTTAACAAAGCCGTATAAAGCCTGAG
CCTGTCCTCCCCCAACGACGAACACCGGGACAAAGGCCTTCTCGGACGTA
TAAACGACAGCGAAGTGAGTGTCAACCGGTGCTTGTACCTTCTCCAAGCA
AGCTGAATAGCCACAGCTGCCCAAGTTCTCCATCCTGGAGAATAGTACCT
GGCACTTCTCTTCACTTTCTCCTTAACAAACGTGTACCTGAAATGTTGTG
TCACATATTTCACATCTTCGGCTTCCAGGCCAAATGCCTCTGTTGTTTCC
AGGGTTATTAAAGTAGATGAAGATGGCGGTAGCCTTTCGATGAAGGGTCT
CCGAAGGCACCAGGATAGAAGCTCATCGCCACTGAAGTTTCCAGGGCCCA
ACATGCAGCAACTTTTGATGTTGTTGTGGAGAATTTGGCTGCTTTGAAGA
TGCCCTCTTACTACAAATAGCATTCTTTGTACTGGGTCACCCTCTTTTGT
TATCACTTCACCCTTTGTAAATATGAGAGACTTCACTCGATCACAAATAT
TCTCCAAAACCAAATCATCCATATGTTGGAACAATGGTACCTGTCTTACT
AAGTCCAAGCAGAGATGATACTTGATGTCCCTTCTTAAGCCCTCAGGGAG
GTTACTGATCATCTCACACTCATCAACACCGCGCATTGCCGCCCATCGCT
GCCGC
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