CF836180

Overview
NameCF836180
Unique NameCF836180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836180_ssr133 microsatellite CF836180_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1158 contig Csv1_Contig1158:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836180 vs. ExPASy Swiss-Prot
Match: BCAT2_ARATH (Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.515e-71
Identity = 125/157 (79.62%), Postives = 137/157 (87.26%), Query Frame = 3
Query:  228 DDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIMPLLIGSGPVLGLGPAPEYTFLAYASPVGN 698
            DD YADLDWDNLGF + PADYMY MKCSK   F QG+LS Y NI+LSPSA VLNYGQ +YEGTKAYR E+G++LLFRPD NA RMK+GAERM MPSPSVDQFV+AVKQ ALANKRWVPP GKGTLYI PLL+GSGP+LGLGPAPEYTF+ YASPVGN
Sbjct:   50 DDVYADLDWDNLGFGLNPADYMYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGN 206          
BLAST of CF836180 vs. ExPASy Swiss-Prot
Match: BCAT5_ARATH (Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.505e-60
Identity = 104/155 (67.10%), Postives = 127/155 (81.94%), Query Frame = 3
Query:  234 EYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIMPLLIGSGPVLGLGPAPEYTFLAYASPVGN 698
            E A++DWD + F +KP DYMY MKCS+   F QGQL  + NI+++P+A VLNYGQG++EG KAYR +DG ILLFRP+ NA RM+ GAERMCMPSP+V+QFV+AVK   LANKRW+PPPGKG+LYI PLL+G+G VLGL PAPEYTFL + SPVGN
Sbjct:   78 ELAEIDWDKIDFGLKPTDYMYAMKCSRDGEFSQGQLQPFGNIDINPAAGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAIRMRNGAERMCMPSPTVEQFVEAVKTTVLANKRWIPPPGKGSLYIRPLLMGTGAVLGLAPAPEYTFLIFVSPVGN 232          
BLAST of CF836180 vs. ExPASy Swiss-Prot
Match: BCAT3_ARATH (Branched-chain-amino-acid aminotransferase 3, chloroplastic OS=Arabidopsis thaliana GN=BCAT3 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.505e-60
Identity = 106/156 (67.95%), Postives = 129/156 (82.69%), Query Frame = 3
Query:  234 EYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGR-ILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIMPLLIGSGPVLGLGPAPEYTFLAYASPVGN 698
            E AD+DWD +GF +KPADYMY MKC+    F +G+L R+ NIE+SPSA VLNYGQG++EG KAYR +DG  ILLFRP+ NA RM+ GAERMCMP+P+V+QFV+AV +  LANKRWVPPPGKG+LY+ PLL+G+G VLGL PAPEYTF+ Y SPVGN
Sbjct:   75 ELADIDWDTVGFGLKPADYMYVMKCNIDGEFSKGELQRFGNIEISPSAGVLNYGQGLFEGLKAYRKKDGNNILLFRPEENAKRMRNGAERMCMPAPTVEQFVEAVTETVLANKRWVPPPGKGSLYVRPLLMGTGAVLGLAPAPEYTFIIYVSPVGN 230          
BLAST of CF836180 vs. ExPASy Swiss-Prot
Match: BCAT1_ARATH (Branched-chain-amino-acid aminotransferase 1, mitochondrial OS=Arabidopsis thaliana GN=BCAT1 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 9.758e-60
Identity = 115/200 (57.50%), Postives = 142/200 (71.00%), Query Frame = 3
Query:  102 LRNLIHLFRPASSSLTSKLGACYFCTSHVASL-QQPGKPSVFSDDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIMPLLIGSGPVLGLGPAPEYTFLAYASPVGN 698
            LR  +  +   SS L+   G     T   AS+ ++    +   D+EYAD+DWDNLGFS+   D+M+  K  +  NF+QG LSRY NIEL+P+A +LNYGQG+ EG KAYR EDGR+LLFRP+LNA RMKIGAERMCM SPSV QF++ VKQ  LAN+RWVPPPGKG+LY+ PLL GSG  LG+  A EYTFL + SPV N
Sbjct:    3 LRRCLPQYSTTSSYLSKIWGFRMHGTKAAASVVEEHVSGAEREDEEYADVDWDNLGFSLVRTDFMFATKSCRDGNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRVLLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGASLGVAAASEYTFLVFGSPVQN 202          
BLAST of CF836180 vs. ExPASy Swiss-Prot
Match: BCAT6_ARATH (Branched-chain-amino-acid aminotransferase 6 OS=Arabidopsis thaliana GN=BCAT6 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.354e-58
Identity = 101/171 (59.06%), Postives = 133/171 (77.78%), Query Frame = 3
Query:  186 VASLQQPGKPSVFSDDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIMPLLIGSGPVLGLGPAPEYTFLAYASPVGN 698
            +A    P + +  +D++YA++ W+ LGF++ P DYMY  KC + E+F QG++  Y +I +SP + +LNYGQG++EG KAYRTED RI +FRPD NA RM+ GAER+CM  P+++QFV+AVKQ  LANK+WVPPPGKGTLYI PLL+GSG  LG+ PAPEYTFL YASPVG+
Sbjct:    1 MAPSSSPLRTTSETDEKYANVKWEELGFALTPIDYMYVAKCRQGESFTQGKIVPYGDISISPCSPILNYGQGLFEGLKAYRTEDDRIRIFRPDQNALRMQTGAERLCMTPPTLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLLGSGATLGVAPAPEYTFLIYASPVGD 171          
BLAST of CF836180 vs. ExPASy Swiss-Prot
Match: BCAT7_ARATH (Putative branched-chain-amino-acid aminotransferase 7 OS=Arabidopsis thaliana GN=BCAT7 PE=5 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.558e-57
Identity = 100/158 (63.29%), Postives = 124/158 (78.48%), Query Frame = 3
Query:  225 SDDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIMPLLIGSGPVLGLGPAPEYTFLAYASPVGN 698
            +D++YA++ WD LGF++ P DYMY  KC + E+F  G++  Y +I +SP A +LNYGQG++EG KAYRTEDGRI LFRPD NA RM+ GA+R+CM  PS +QFV+AVKQ  LAN +WVPPPGKG LYI PLLIG+G VLG+  APEYTFL Y SPVGN
Sbjct:   17 ADEKYANVKWDELGFALVPTDYMYVAKCKQGESFSTGEIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNAIRMQTGADRLCMTPPSPEQFVEAVKQTVLANNKWVPPPGKGALYIRPLLIGTGAVLGVASAPEYTFLIYTSPVGN 174          
BLAST of CF836180 vs. ExPASy Swiss-Prot
Match: BCAT4_ARATH (Probable branched-chain-amino-acid aminotransferase 4 OS=Arabidopsis thaliana GN=BCAT4 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.545e-56
Identity = 98/161 (60.87%), Postives = 126/161 (78.26%), Query Frame = 3
Query:  213 PSVFSDDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIMPLLIGSGPVLGLGPAPEYTFLAYASPVG 695
            P   SD++YA++ W+ L F     DYMY  KC+  E+F++G++  +A+++L+P AAVL YGQG+YEG KAYRTEDGRILLFRPD N  R++ GA+R+ MP PSVDQFV A+KQ+ALANK+W+PPPGKGTLYI P+L GSGP+LG  P PE TF A+A PVG
Sbjct:    9 PVSVSDEKYANVKWEELAFKFVRTDYMYVAKCNHGESFQEGKILPFADLQLNPCAAVLQYGQGLYEGLKAYRTEDGRILLFRPDQNGLRLQAGADRLYMPYPSVDQFVSAIKQVALANKKWIPPPGKGTLYIRPILFGSGPILGSFPIPETTFTAFACPVG 169          
BLAST of CF836180 vs. ExPASy Swiss-Prot
Match: ILVE_HAEIN (Branched-chain-amino-acid aminotransferase OS=Haemophilus influenzae GN=ilvE PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.385e-28
Identity = 65/152 (42.76%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  243 DLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKG-TLYIMPLLIGSGPVLGLGPAPEYTFLAYASPVG 695
            DLDW+NLGFS    DY +     K   + +G+L+  + + +   +  L+YGQ  +EG KAYR +DG I LFRP  NA RM+  A+R+ MP    + FV A K++  AN+ W+ P G G TLY+ P LIG G  +G+  APE+ F  +  PVG
Sbjct:    3 DLDWNNLGFSYIKTDYRFIAHW-KDGKWDEGKLTTDSTLHIHEGSTALHYGQQCFEGLKAYRCKDGSINLFRPQANAERMQRTADRLLMPRVPTELFVRACKEVVKANQDWLGPYGSGATLYLRPFLIGVGENIGVKTAPEFIFSVFCCPVG 153          
BLAST of CF836180 vs. ExPASy Swiss-Prot
Match: ILVE_HELPJ (Branched-chain-amino-acid aminotransferase OS=Helicobacter pylori J99 GN=ilvE PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.774e-28
Identity = 63/152 (41.45%), Postives = 96/152 (63.16%), Query Frame = 3
Query:  243 DLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKG-TLYIMPLLIGSGPVLGLGPAPEYTFLAYASPVG 695
            +LDW NLGFS    D+ + +   K+ ++ QG+L     ++LS  + VL+YGQ  +EG KAYR++ G+ LLFRP  NA R++   ER+ MP  S + F+ A  ++  AN++W+ P   G +LY+ P +IG G  LG+ PA EY F+ + +PVG
Sbjct:    6 NLDWKNLGFSYIKTDFRF-IATYKNGSWSQGELVSENALQLSEGSPVLHYGQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERLLMPKVSEELFLKACAEVIKANQKWLAPYKSGASLYLRPFVIGVGDNLGVKPASEYLFIVFCAPVG 156          
BLAST of CF836180 vs. ExPASy Swiss-Prot
Match: ILVE_HELPY (Branched-chain-amino-acid aminotransferase OS=Helicobacter pylori GN=ilvE PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 63/152 (41.45%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  243 DLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKG-TLYIMPLLIGSGPVLGLGPAPEYTFLAYASPVG 695
            +LDW NLGFS    D+ + +   K+ ++ QG L     ++LS  + VL+YGQ  +EG KAYR++ G+ LLFRP  NA R++   ER+ MP  S + F+ A  ++  AN++W+ P   G +LY+ P +IG G  LG+ PA EY F+ + +PVG
Sbjct:    6 NLDWKNLGFSYIKTDFRF-IATYKNGSWSQGGLVSENMLQLSEGSPVLHYGQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERLLMPKVSEELFLRACAEVVKANQKWLAPYKSGASLYLRPFVIGVGDNLGVKPANEYLFIVFCAPVG 156          
The following BLAST results are available for this feature:
BLAST of CF836180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
BCAT2_ARATH5.515e-7179.62Branched-chain-amino-acid aminotransferase 2, chlo... [more]
BCAT5_ARATH1.505e-6067.10Branched-chain-amino-acid aminotransferase 5, chlo... [more]
BCAT3_ARATH1.505e-6067.95Branched-chain-amino-acid aminotransferase 3, chlo... [more]
BCAT1_ARATH9.758e-6057.50Branched-chain-amino-acid aminotransferase 1, mito... [more]
BCAT6_ARATH5.354e-5859.06Branched-chain-amino-acid aminotransferase 6 OS=Ar... [more]
BCAT7_ARATH1.558e-5763.29Putative branched-chain-amino-acid aminotransferas... [more]
BCAT4_ARATH6.545e-5660.87Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_HAEIN3.385e-2842.76Branched-chain-amino-acid aminotransferase OS=Haem... [more]
ILVE_HELPJ5.774e-2841.45Branched-chain-amino-acid aminotransferase OS=Heli... [more]
ILVE_HELPY2.194e-2741.45Branched-chain-amino-acid aminotransferase OS=Heli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02I21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836180 ID=CF836180; Name=CF836180; organism=Citrus sinensis; type=EST; length=698bp
GACGCTTTCTCTCTTCTCGGTTATTAACTCTGCCAAAAGGCGTCAACACC
GGTGCAAATAGCAACACAAGAATCATGATTCTAAAGGATGGTGCTGCATG
CCTCCGCAATTTGATCCACTTATTTCGACCTGCTTCTTCTTCTTTGACGT
CCAAGCTTGGAGCTTGCTATTTCTGTACATCTCATGTTGCCTCTCTGCAA
CAACCGGGCAAACCCTCTGTTTTCAGTGATGATGAGTATGCTGATTTGGA
CTGGGATAATCTTGGATTTAGTATCAAGCCAGCTGATTATATGTACACCA
TGAAATGTTCTAAACACGAAAATTTCAAACAAGGACAGCTTAGTCGGTAC
GCAAACATTGAGCTAAGCCCTTCAGCAGCAGTCTTAAATTATGGACAGGG
AGTGTACGAAGGAACAAAAGCATACAGGACAGAAGATGGGCGTATTCTTC
TCTTCCGGCCAGATCTAAATGCTTCCCGTATGAAGATAGGTGCCGAGAGG
ATGTGCATGCCGTCACCCTCCGTTGATCAGTTTGTCGACGCTGTGAAACA
AATAGCTCTTGCTAACAAGCGTTGGGTTCCTCCTCCAGGAAAAGGCACAC
TGTACATCATGCCATTGCTCATAGGAAGCGGCCCTGTGTTGGGTTTGGGT
CCAGCACCTGAATACACTTTCCTCGCATATGCCTCCCCTGTCGGAAAC
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