CF836186

Overview
NameCF836186
Unique NameCF836186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836186_ssr479 microsatellite CF836186_ssr479:479..490. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig423 contig Csv1_Contig423:429..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_SOYBN (40S ribosomal protein SA OS=Glycine max PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.810e-55
Identity = 116/169 (68.64%), Postives = 123/169 (72.78%), Query Frame = -1
Query:  305 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTNLTSGD-QWPSQIADGGWAGGEVQKPIPGVPYF-----PEAPAATVPLGGD 793
            QTSF+EPRLLI TDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPG KWDVMVDLFFYR              A+DYA  ++N    + D QWP  I D  W+   V +PIP VP        EAPAA    GGD
Sbjct:  120 QTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAVDYAITDFNAGAIAADGQWPGTI-DQSWSDA-VPQPIPAVPGVNWGAPAEAPAAA---GGD 283          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_CICAR (40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.213e-53
Identity = 108/149 (72.48%), Postives = 115/149 (77.18%), Query Frame = -1
Query:  350 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTN-LTSGDQWPSQIADGGWAGGEVQKPIPGVP 793
            QTSF+EPRLLI TDPRTDHQPIKEAALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPG KWDVMVDLFFYR              A DYA A++N + + S  QWP+ I D  W    V +PIP VP
Sbjct:  116 QTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFNVSAIPSDGQWPAAI-DQPW-NDAVPQPIPAVP 262          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_VITVI (40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.447e-52
Identity = 117/209 (55.98%), Postives = 125/209 (59.81%), Query Frame = -1
Query:  197 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAI-DYATAEYNTNL---TSGDQWPSQIADGGWAGGEVQ--KPIPGVP---YFPEAP-AATVPLGGDGWXXXXXXXXXXXXXXXXXXXXXXXVSAAPPPTGWD 793
            QTSF+EPRLLI TDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR TI PGHKWDVMVDLFFYR              A  DY   +Y         G  W + I D    G +V    PIP VP   +   AP  + VP+  DGW                       V   PPP GW+
Sbjct:  113 QTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGDWGAPITDAPQWGADVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGW---------DAAAAPPVAVPPPVVEGVPPPAGWE 312          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DAUCA (40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.174e-52
Identity = 106/165 (64.24%), Postives = 111/165 (67.27%), Query Frame = -1
Query:  299 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAPAATVPLGGDGW 793
            QTSF+EPRLLI TDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG I  GHKW+VMVDLFFYR                DY        +   DQW + I D  W G  VQ     VP      A   P+ GDGW
Sbjct:  113 QTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEEDLPVGDYVADYAAAPIGGADQW-NAIPDAQWGGDVVQPANSAVPAGTWTDAG--PIAGDGW 274          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA2_ARATH (40S ribosomal protein Sa-2 OS=Arabidopsis thaliana GN=RPSaB PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.532e-49
Identity = 105/168 (62.50%), Postives = 117/168 (69.64%), Query Frame = -1
Query:  308 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQW-PSQIADGGWAGGEVQKPIP-----GVPYFPEAPAATVPLGG 793
            QTSF+EPRLLI TDPRTDHQPIKE ALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI    KWDVMVDLFFYR                + A  + +  +  GDQW  +QI+D  W+ GEV++PI      GV       AA+VP  G
Sbjct:  118 QTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGD------EEAEVQADYGMVGGDQWTTAQISDAAWS-GEVEQPISAAPAVGVTVAAGWEAASVPAAG 278          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA1_ARATH (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 1.257e-48
Identity = 107/173 (61.85%), Postives = 113/173 (65.32%), Query Frame = -1
Query:  299 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNT------NLTSGDQW-PSQIADGGWAGGEVQKPIPGVPYFPE-APAATVPLGGDGW 793
            QTSF+EPRLLI TDPRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI  G KWDVMVDLFFYR                    AEY         +  GDQW  +QI D  W  GE Q PI   P     + +A  P  G GW
Sbjct:  117 QTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAG----PQAEYGALPAPEYGMVGGDQWTTAQIPDAAWP-GEGQAPISAAPAAASWSDSAAAPADG-GW 283          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_BRANA (40S ribosomal protein SA OS=Brassica napus GN=LRP PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.799e-48
Identity = 103/168 (61.31%), Postives = 108/168 (64.29%), Query Frame = -1
Query:  302 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR---XXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQW-PSQIADGGWAGGEVQKPIPGVPYFPEAPAATVPLGGDG 793
            QTSF+EPRLLI TDPRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP  KWDVMVDLFFYR                        EY      GDQW  + I D  W  GE Q PI   P       +  P   +G
Sbjct:  114 QTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPAQKWDVMVDLFFYREPEETKPEDEDEVAPQAEFGLPAPEYG----GGDQWTTAAIPDAAWP-GEAQAPISAAPAAGSWNDSAAPAAAEG 276          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_OSTTA (40S ribosomal protein SA OS=Ostreococcus tauri GN=Ot03g03270 PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.033e-34
Identity = 69/90 (76.67%), Postives = 76/90 (84.44%), Query Frame = -1
Query:  515 FNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 784
            F EPR+L+ TDPRTD QPI E A  NIPTIAFCDTDSP++ VDI IPANNK K SIGCL++LLARMVLQMRGTI P + WDVMVDLFFYR
Sbjct:  113 FAEPRVLVVTDPRTDAQPISETAFVNIPTIAFCDTDSPLKNVDIAIPANNKAKQSIGCLYYLLARMVLQMRGTISPANPWDVMVDLFFYR 202          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_OSTLU (40S ribosomal protein SA OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_12355 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.301e-34
Identity = 90/196 (45.92%), Postives = 104/196 (53.06%), Query Frame = -1
Query:  197 FNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAPAATVPLGGDGWXXXXXXXXXXXXXXXXXXXXXXXVSAAPPPTGWD 784
            F EPR+LI TDPRTD QPI E A  N+PTIAFCDTDSP++ VD+ IPANNK KHSIGCL++LLARMVLQMRGT+   + WDVMVDLFFYR                + A A      ++G    +  A G  +  E QKP    P    APAA        W                        S AP PTGWD
Sbjct:  113 FAEPRVLIVTDPRTDAQPISETAYVNLPTIAFCDTDSPLKNVDVAIPANNKAKHSIGCLYYLLARMVLQMRGTVSAANPWDVMVDLFFYRDPEELEAKEE------EAAAAAAAPAESAGYNAVADAAYGAESWDE-QKPAEAFPTGGFAPAA------GNW------------------------SEAPAPTGWD 271          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_CHLRE (40S ribosomal protein SA OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_126059 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.339e-33
Identity = 66/93 (70.97%), Postives = 77/93 (82.80%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLLI TDPRTDHQP+KE++  NIPTIAFCDTDSP+ +VD+ IPANNKGKHSIG L++LLARMVL+MR  I   + W V VDLFFYR
Sbjct:  108 QKAFEEPRLLILTDPRTDHQPVKESSYMNIPTIAFCDTDSPLTHVDVAIPANNKGKHSIGVLYFLLARMVLEMRDQINVTNPWSVPVDLFFYR 200          
The following BLAST results are available for this feature:
BLAST of CF836186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
RSSA_SOYBN1.810e-5568.6440S ribosomal protein SA OS=Glycine max PE=2 SV=1[more]
RSSA_CICAR2.213e-5372.4840S ribosomal protein SA OS=Cicer arietinum GN=RAP... [more]
RSSA_VITVI2.447e-5255.9840S ribosomal protein SA OS=Vitis vinifera GN=GSVI... [more]
RSSA_DAUCA4.174e-5264.2440S ribosomal protein SA OS=Daucus carota GN=179B ... [more]
RSSA2_ARATH2.532e-4962.5040S ribosomal protein Sa-2 OS=Arabidopsis thaliana... [more]
RSSA1_ARATH1.257e-4861.8540S ribosomal protein Sa-1 OS=Arabidopsis thaliana... [more]
RSSA_BRANA2.799e-4861.3140S ribosomal protein SA OS=Brassica napus GN=LRP ... [more]
RSSA_OSTTA1.033e-3476.6740S ribosomal protein SA OS=Ostreococcus tauri GN=... [more]
RSSA_OSTLU2.301e-3445.9240S ribosomal protein SA OS=Ostreococcus lucimarin... [more]
RSSA_CHLRE4.339e-3370.9740S ribosomal protein SA OS=Chlamydomonas reinhard... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836186 ID=CF836186; Name=CF836186; organism=Citrus sinensis; type=EST; length=793bp
TTAACTACCAAAATATTAGGTACCATCATCACCCTTTAAAAAACCTAATT
CTCAATGTCTAGAACTATAACTGCTTCAAAAAAAAAAAGAAAAAAGCCAT
AGTTCTTTGCAGAACATAAAGAAGTTCAAACTAACACATAGTTGTACCCC
AAAAGGCTTGAAATGATTGAAACAAAACTCTCTCAAAATAAAATTAGTCC
CATCCAGTAGGTGGTGGGGCAGCAGAAACATCAGGAGCTGTAACTGCTGC
CATTGGTGGTGCCGTAACTGCTGCCATTGGTGGTGCCGGCACTGCATCCC
ATCCATCCCCACCCAAAGGAACTGTAGCTGCTGGTGCTTCTGGGAAATAG
GGAACACCAGGAATGGGCTTCTGAACTTCACCACCCGCCCACCCACCATC
AGCAATTTGGGAAGGCCATTGATCACCACTGGTAAGATTCGTGTTGTACT
CTGCTGTAGCATAATCAATAGCAGCAGTTTCTTCTTCTTCAGCCTGCTTG
GTTTCTTCTGGCTCCCTGTAGAAGAACAGATCGACCATCACATCCCACTT
GTGGCCAGGACGAATAGTGCCGCGCATCTGGAGAACCATTCTAGCCAAAA
GCCAGAAGAGACACCCAATGCTGTGTTTGCCCTTGTTATTGGCAGGAATG
CCAATATCAACATAACGCATAGGTGAGTCAGTGTCACAAAAGGCAATGGT
GGGAATGTTTCCAAGGGCAGCTTCCTTAATTGGCTGATGGTCTGTTCGTG
GATCTGTTANAATGAGAAGTCGGGGCTCATTGAATGATGTTTG
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