CF836188

Overview
NameCF836188
Unique NameCF836188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836188_ssr107 microsatellite CF836188_ssr107:107..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836188 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.182e-30
Identity = 68/124 (54.84%), Postives = 81/124 (65.32%), Query Frame = -3 
Query:  351 FKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITDESECCSGIDYSLPLPQMLKVWQEAE-------SKEISYPNLEDSKGSIPARPTGFAESFTSSDGR 701
            FK AID  ++++EET  S+  VAELAGHC AREPY RPDMGH VN+LS LVE W+P     E   GID  + LPQ LK WQ  E       S     P+L++++ SIP RP GFAESFTS DGR
Sbjct:  819 FKKAIDTTIDLDEETLASVHTVAELAGHCCAREPYQRPDMGHAVNILSSLVELWKPSDQNPEDIYGIDLDMSLPQALKKWQAYEGRSDLESSTSSLLPSLDNTQMSIPTRPYGFAESFTSVDGR 942
The following BLAST results are available for this feature:
BLAST of CF836188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMK1_ARATH2.182e-3054.84Probable receptor protein kinase TMK1 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02J02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836188 ID=CF836188; Name=CF836188; organism=Citrus sinensis; type=EST; length=715bp
TTTTTTTTTTTTTGACATGAATCCTTTGTAAATTAAGCGACAACCTTATA
TTAAAGATATACGCGTTGCAGTTCCGACTAATGACAAAAAACGTGAAATC
AACATCTCTATCTATCTACAGGAATATATCATTGTTTGCAAGGTTCAAGA
AACAAATCCCAAAACCTCAAATGAATTATAATGAACACTTGATTTTAATT
CATTGTAGTGTATGCAATAACCTATATGCAATGCTTGATATTGATATTCC
TGATCCAGAAAACATCTAATGGCACGAAGAAGGCGAGCAGCATATTTAAC
GAAATCTTGACAGGATTCATTATTATCTGCTCTAGAGTTACCTTCACTCA
TCGGCCATCAGAAGAAGTGAAGGACTCTGCAAATCCAGTTGGCCTAGCTG
GTATGCTTCCCTTGCTGTCCTCGAGATTAGGATAGCTTATCTCTTTGCTT
TCTGCTTCCTGCCAAACCTTCAACATCTGGGGAAGTGGGAGGCTATAATC
AATTCCGGAACAACACTCTGATTCATCAGTAATTGGTCTCCATTTCTCAA
CCAGCGGGGATAGCACATTCACCACATGGCCCATATCAGGCCGATGATAT
GGCTCCCTTGCAGTGCAATGTCCAGCTAGTTCAGCCACGATGGAGATGCT
CTCAAAGGTTTCTTCATTTACTTCAAGAGCTGGATCAATCGCAGCCTTAA
ATTTCTCTTTGCTTG
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