CF836192

Overview
NameCF836192
Unique NameCF836192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5151 contig Csv1_Contig5151:1728..2466. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836192 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.373e-30
Identity = 67/83 (80.72%), Postives = 71/83 (85.54%), Query Frame = -2 
Query:  490 FGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEFVFLKL 738
            FGVD SLEGNLILCRQVDQPGMIG+VGNILGE NVNVNFMSVGRT  R   IMAIGVDEEP+  +L+ IG V AIEEFVFLKL
Sbjct:  542 FGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVFLKL 624
The following BLAST results are available for this feature:
BLAST of CF836192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SERA_ARATH1.373e-3080.72D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02J04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836192 ID=CF836192; Name=CF836192; organism=Citrus sinensis; type=EST; length=739bp
TTTTTTTTTTTTTTTTAGCACAATGAATAATTATTTACTTAGCAACTTTT
GAGATAAGCTTCCATTGAATAACTGAAATTACAAATTGAAAGCTTTCCCT
CTGCTCTATGGAAGCAAGCTTATACAAATACTGGCTAGAATTACGATTTA
TGAAAGGCTCATACAAACACCAATAGAAGCACTTAATCAGGTGCTACCAG
CTTAAATAAAGTTTAAGCAATTTCTACACCATCAATTAAGGACGGTAACT
AACACTTGACAATAAAAAAGACTATCACTATAGTTGAGTTCCAATCTAAT
GCGCGACTGCACACGTGGCGAGTGTTCATTAGCAGGATTGTGGTCCCCAC
GATGTGGCTCCACCAATTATAAATCGCCATGCACGTAGTCGCACGCTATA
AGATACGTGCAACAAAGTGTACCTAATCGAAATCCATCACCGGTTACTCG
ATTCAGAAACCATATTATTTCAAACTCTTTCATGAATCATAGTTTGAGGA
ATACAAACTCTTCAATTGCAGGCACCTTTCCTATTTCCTTGAGGGAATCC
TGATTTGGTTCTTCATCAACGCCGATTGCCATGATCCCATGATTCCTCCT
GAAAGTTCTTCCTACACTCATGAAGTTCACATTGACATTATGCTCACCAA
GTATGTTCCCAACCTTGCCAATCATGCCAGGCTGATCAACCTGCCGGCAC
AGGATGAGGTTCCCTTCCAGGCTCGCATCAACACCAAAT
back to top