CF836193

Overview
NameCF836193
Unique NameCF836193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836193_ssr59 microsatellite CF836193_ssr59:59..79. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5151 contig Csv1_Contig5151:31..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836193 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.135e-49
Identity = 108/163 (66.26%), Postives = 125/163 (76.69%), Query Frame = 1
Query:  205 YTTPPSFT-IRNSLQTALETSELPVSKFQ----DDLNLQAVTPKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 678
            Y T    T I  +L+T  +T+    ++F     D        PKP ILV+EKLGEAG+ +LR FG+V+C YDLSPE L +K+++ DALIVRSGTKVTR VFEAA G+LKVVGRAGVGIDNVDLQAATE GCLVVNAP ANTVAAAEHGIALLASMARNV+QAD
Sbjct:   39 YATSVKLTAISAALKTVEQTTLTEDNRFSTVGSDSDEYNPTLPKPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQAD 201          
BLAST of CF836193 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  328 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 675
            ILV++ L E  + IL   G VE    L+ E L EKI   D L+VRSGTKVTR V E A  KLKV+GRAGVG+DN+D++AATE G +VVNAP A++++ AE  + L+ + ARN+ QA
Sbjct:    4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEKAE-KLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQA 118          
BLAST of CF836193 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.871e-22
Identity = 51/117 (43.59%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  328 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 678
            +L+++ + E G++ L     V     ++PE L + I   DA++VRS TKVTR V EAA  +LK++ RAGVG+DNVD++AAT+ G +V+NAP + ++  AEH I L+ ++AR ++ AD
Sbjct:    6 VLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEAAP-RLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIAD 121          
BLAST of CF836193 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.308e-21
Identity = 48/117 (41.03%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  328 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 678
            +LVS+ + + G+ IL+    V+    LS   + + + + DA+++RS TKVT  + +A + +LK++GRAGVG+DN+D+ AAT  G +VVN+P  NT+AAAEH +A++ ++AR++  A+
Sbjct:   32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS-QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDAN 147          
BLAST of CF836193 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 54/118 (45.76%), Postives = 79/118 (66.95%), Query Frame = 1
Query:  328 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 678
            +LV+E + E  +  +R  G  VE    +S E L  ++ + +A++VRS TKV   V +AA   LK++GRAGVG+DN+D+ AAT+ G +VVNAP  NT++ AEH IAL+ + AR + QAD
Sbjct:    3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQAAKN-LKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQAD 119          
BLAST of CF836193 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 1
Query:  322 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 678
            P +L+++KL ++ +A L     V  +       L   + + DAL+VRS T V   V  AA  KLK+V RAGVG+DNVD+ AAT  G LVVNAP +N  +AAEH +ALL + +R +++AD
Sbjct:    4 PVVLIADKLAQSTVAALGDQVEVRWVDGPDRTKLLAAVPEADALLVRSATTVDAEVLAAAP-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEAD 121          
BLAST of CF836193 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 1
Query:  328 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 675
            IL+S+ L      IL+  G  V    +LS E L  ++  C+ LIVRS TKVT  V  AA  KL+VVGRAG G+DNVDL+AAT  G LV+N P  N+++AAE    +L  +AR + QA
Sbjct:    9 ILISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE-KLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQA 124          
BLAST of CF836193 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 53/119 (44.54%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  322 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 678
            P +L+++KL  + +A L     V  +     + L   + + DAL+VRS T V   V  AA  KLK+V RAGVG+DNVD+ AAT  G LVVNAP +N  +AAEH +ALL + +R +  AD
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAP-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAAD 121          
BLAST of CF836193 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 53/119 (44.54%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  322 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 678
            P +L+++KL  + +A L     V  +     + L   + + DAL+VRS T V   V  AA  KLK+V RAGVG+DNVD+ AAT  G LVVNAP +N  +AAEH +ALL + +R +  AD
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAP-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAAD 121          
BLAST of CF836193 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 49/117 (41.88%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  328 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 678
            +LVS+K+   GL  L     +E +     +A  +++   DAL+VRS TKVT  +F      LK+VGRAGVG+DN+D+  AT+ G +V+NAP  NT++ AEH  A+++S+ R++ QA+
Sbjct:    4 VLVSDKMSNDGLQPLIESDFIEIVQKNVADAE-DELHTFDALLVRSATKVTEDLFNKMTS-LKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQAN 118          
The following BLAST results are available for this feature:
BLAST of CF836193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SERA_ARATH1.135e-4966.26D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA3.326e-2553.45D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_METTH5.871e-2243.59D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_SYNY31.308e-2141.03D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_ARCFU2.914e-2145.76D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
SERA_MYCLE7.935e-1944.54D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_RAT3.015e-1847.86D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]
SERA_MYCTU3.015e-1844.54D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO3.015e-1844.54D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_BACSU3.015e-1841.88D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836193 ID=CF836193; Name=CF836193; organism=Citrus sinensis; type=EST; length=679bp
CACAAAAGCCCCCATCAAAGCCCCAAAACAAAACCTTAAAACTCCACAGC
CATCGCGGCTTCTTCTTCTTCTTCTTCTTCAATCAAACCCATCTTCACAA
CCCGATCAAAATCATCAAACTCATCAAAATCATCCCTCCTCTCTTTCCTC
CACAACACAAACCCTAAACCCATTTCCTTAAAATTCTCTTCTCATAATTC
CAATTATACCACTCCTCCTTCATTCACCATCAGAAACTCGTTACAAACAG
CCCTGGAAACATCAGAGCTTCCGGTTTCCAAATTCCAGGACGATCTAAAC
CTCCAGGCCGTAACACCAAAGCCGACAATTCTAGTTTCCGAGAAGCTCGG
AGAAGCCGGGCTTGCAATCCTGCGCAGCTTCGGCAACGTTGAGTGCTTGT
ACGATCTTTCCCCGGAAGCGCTCTGCGAGAAGATCTCGCAGTGCGACGCG
TTGATCGTCAGGAGTGGCACTAAAGTGACGAGAAGTGTCTTTGAGGCCGC
TAATGGGAAGTTAAAAGTTGTTGGGAGAGCTGGCGTTGGCATTGACAATG
TTGATCTTCAAGCTGCTACTGAGTTCGGATGTCTTGTTGTTAATGCTCCG
ATAGCGAACACGGTGGCGGCCGCCGAACATGGGATCGCTTTGCTTGCTTC
CATGGCCAGAAATGTTTCTCAGGCTGATG
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