CF836200

Overview
NameCF836200
Unique NameCF836200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig483 contig Csv1_Contig483:1..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.900e-44
Identity = 87/111 (78.38%), Postives = 92/111 (82.88%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            V DDAWLNGEFI+ VQQRG AIIKARK          ACDHIRDWV GTP+G +VSMGVY DGSY VP+GLIYSFPVTC NGEW IVQGLSIDEFSRKKLDLTAEEL+EEK
Sbjct:  214 VSDDAWLNGEFISTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIVQGLSIDEFSRKKLDLTAEELTEEK 324          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.880e-43
Identity = 86/111 (77.48%), Postives = 91/111 (81.98%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            VK+D WLNGEFI+ VQQRG AIIKARK          ACDHIRDWV GTPEG +VSMGVY DGSY VPAGLIYSFPVTCRNGEWTIVQGL ID+ SRKK+DLTAEEL EEK
Sbjct:  214 VKNDEWLNGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLPIDDASRKKMDLTAEELKEEK 324          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.880e-43
Identity = 85/111 (76.58%), Postives = 92/111 (82.88%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            VKDDAWL+GEFI+ VQQRG AIIKARK          ACDHIRDWV GTPEG +VSMGVY DGSY VP+GLIYSFPVTCRNG+W+IVQGL IDE SRKK+DLTAEEL EEK
Sbjct:  214 VKDDAWLDGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIVQGLPIDEVSRKKMDLTAEELKEEK 324          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.143e-43
Identity = 84/111 (75.68%), Postives = 88/111 (79.28%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            V DDAWLNGEFIT VQQRG AIIKARK          ACDHI DWV GTPEG WVSMGVY DGSY VPAG+IYSFPVTC+NGEWTIVQGL ID+ SRKK+D TA EL EEK
Sbjct:  214 VADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIVQGLPIDDDSRKKMDATAAELVEEK 324          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.714e-42
Identity = 83/112 (74.11%), Postives = 88/112 (78.57%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            V DDAWLNGEFIT VQQRG AIIKARK          ACDHIRDWV GTPEG WVSMGVY DGSY VPAG+IYSFPVTC++GEW IVQGL IDE SR+K+D T  EL EEKA
Sbjct:  214 VADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKDGEWKIVQGLPIDEVSRQKMDATGAELVEEKA 325          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 7.897e-42
Identity = 83/111 (74.77%), Postives = 88/111 (79.28%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            V DD WLNGEFIT VQQRG AIIKARK          ACDHIRDWV GTPEG +VSMGVY DGSY VP+GLIYSFPVTC  GEW IVQGL IDEFSRKK+D TA+EL+EEK
Sbjct:  214 VSDDEWLNGEFITTVQQRGAAIIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPIDEFSRKKMDATAQELTEEK 324          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.031e-41
Identity = 84/111 (75.68%), Postives = 88/111 (79.28%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            V DD WLN EFI+ VQQRG AIIKARK          ACDHIRDWV GTPEG +VSMGVY DGSY VPAGLIYSFPVTC  GEWTIVQGL IDEFSRKK+D TA+ELSEEK
Sbjct:  214 VADDEWLNTEFISTVQQRGAAIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIVQGLPIDEFSRKKMDATAQELSEEK 324          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 139.428 bits (350), Expect = 1.493e-32
Identity = 69/112 (61.61%), Postives = 84/112 (75.00%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDG-SYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            VKDD+WL GEFIT VQQRG A+IKARK           CDH+RD  FGTPEG +VSMG+  DG SY VP  L+YSFPVT ++  W IV+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  213 VKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEK 324          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.493e-32
Identity = 67/112 (59.82%), Postives = 85/112 (75.89%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGS-YKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            +KDD+WL GEFIT VQQRG A+IKARK           CDH+RD  FGTPEG +VSMG+  DG+ Y VP  L+YSFPVT +N  W +V+GL+I++FSR+K+DLTA+EL+EEK
Sbjct:  213 LKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNPYGVPDDLLYSFPVTIKNKTWKVVEGLTINDFSREKMDLTAKELAEEK 324          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.673e-32
Identity = 66/112 (58.93%), Postives = 84/112 (75.00%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDG-SYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            +KDD+WL GEFIT VQQRG A+IKARK           CDH+RD  FGTPEG +VSMG+  DG SY +P  L+YSFPVT ++  W +V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  213 LKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEGLPINDFSREKMDLTAKELAEEK 324          
The following BLAST results are available for this feature:
BLAST of CF836200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
MDHC_MEDSA2.900e-4478.38Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC2_ARATH1.880e-4377.48Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC1_ARATH1.880e-4376.58Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC_MESCR7.143e-4375.68Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC_BETVU2.714e-4274.11Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDHC_MAIZE7.897e-4274.77Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDHC_ORYSJ1.031e-4175.68Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC_PIG1.493e-3261.61Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_FELCA1.493e-3259.82Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDHC_BOVIN5.673e-3258.93Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836200 ID=CF836200; Name=CF836200; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAAACAATAAAACTGTTATTGATAG
TTTGATACATAAATCACAAGGGGCATTTAATATCCATTTATCCAGGAAAA
GTAACAAAACTCCAAAATCCCGATATTCAAATGCAAAAATAGCAACATAA
AATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAACAATGG
TTTTATTCAAAACTGTAACTCTACCAACTACTCAAACAAAGCTAAGGGCC
TTGGTAACACCCTATTGAAGGGAAAAAAGCTTTTAAAAAAAACTTGAGTA
TGCGAGGGCCTTCTCCTCGGAAAGCTCCTCTGCTGTCAAGTCCAACTTCT
TCCTTGAAAATTCATCAATGCTGAGTCCTTGAACAATTGTCCATTCCCCG
TTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTACTTTGTA
TGAACCATCAAAGTATACCCCCATGGAAACCCAAGGGCCCTCAGGAGTTC
CAAAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGA
GCACTCGAAAGCTTTCTGGCTTTGATGATTGCACCACCACGTTGTTGGAC
TGGGGTTATGAATTCTCCATTCAACCATGCATCATCCTTGACA
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