CF836203

Overview
NameCF836203
Unique NameCF836203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1198 contig Csv1_Contig1198:208..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836203 vs. ExPASy Swiss-Prot
Match: RL291_ARATH (60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.970e-23
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 3
Query:   45 MALSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQGGESAAEE 224
            MA SKNHTAHNQS KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN + GE+A+ E
Sbjct:    1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60          
BLAST of CF836203 vs. ExPASy Swiss-Prot
Match: RL292_ARATH (60S ribosomal protein L29-2 OS=Arabidopsis thaliana GN=RPL29B PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.066e-23
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 3
Query:   45 MALSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQGGESAAEE 224
            MA SKNHTAHNQS KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN + GE+A  E
Sbjct:    1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60          
BLAST of CF836203 vs. ExPASy Swiss-Prot
Match: RL29_RAT (60S ribosomal protein L29 OS=Rattus norvegicus GN=Rpl29 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 3
Query:   45 MALSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 203
            MA SKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF836203 vs. ExPASy Swiss-Prot
Match: RL29_PIG (60S ribosomal protein L29 OS=Sus scrofa GN=RPL29 PE=2 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 3
Query:   45 MALSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 203
            MA SKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF836203 vs. ExPASy Swiss-Prot
Match: RL29_MOUSE (60S ribosomal protein L29 OS=Mus musculus GN=Rpl29 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 3
Query:   45 MALSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 203
            MA SKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF836203 vs. ExPASy Swiss-Prot
Match: RL29_MACFA (60S ribosomal protein L29 OS=Macaca fascicularis GN=RPL29 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 3
Query:   45 MALSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 203
            MA SKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF836203 vs. ExPASy Swiss-Prot
Match: RL29_HUMAN (60S ribosomal protein L29 OS=Homo sapiens GN=RPL29 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 3
Query:   45 MALSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 203
            MA SKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF836203 vs. ExPASy Swiss-Prot
Match: RL29_BOVIN (60S ribosomal protein L29 OS=Bos taurus GN=RPL29 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 3
Query:   45 MALSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 203
            MA SKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF836203 vs. ExPASy Swiss-Prot
Match: RL29_DROME (60S ribosomal protein L29 OS=Drosophila melanogaster GN=RpL29 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.520e-14
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   45 MALSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQGGES 212
            MA SKNHT HNQ+ KAH+NGIK+P + RH ST GMD KFL NQRYARK N    ES
Sbjct:    1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNLSREES 56          
BLAST of CF836203 vs. ExPASy Swiss-Prot
Match: RL29_YEAST (60S ribosomal protein L29 OS=Saccharomyces cerevisiae GN=RPL29 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.383e-12
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 3
Query:   45 MALSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 182
            MA SKNHTAHNQ+ KAH+NGIKKPK +++ S KG+DPKF RN ++A
Sbjct:    1 MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46          
The following BLAST results are available for this feature:
BLAST of CF836203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RL291_ARATH2.970e-2380.0060S ribosomal protein L29-1 OS=Arabidopsis thalian... [more]
RL292_ARATH5.066e-2380.0060S ribosomal protein L29-2 OS=Arabidopsis thalian... [more]
RL29_RAT1.578e-1669.8160S ribosomal protein L29 OS=Rattus norvegicus GN=... [more]
RL29_PIG1.578e-1669.8160S ribosomal protein L29 OS=Sus scrofa GN=RPL29 P... [more]
RL29_MOUSE1.578e-1669.8160S ribosomal protein L29 OS=Mus musculus GN=Rpl29... [more]
RL29_MACFA1.578e-1669.8160S ribosomal protein L29 OS=Macaca fascicularis G... [more]
RL29_HUMAN1.578e-1669.8160S ribosomal protein L29 OS=Homo sapiens GN=RPL29... [more]
RL29_BOVIN1.578e-1669.8160S ribosomal protein L29 OS=Bos taurus GN=RPL29 P... [more]
RL29_DROME2.520e-1467.8660S ribosomal protein L29 OS=Drosophila melanogast... [more]
RL29_YEAST1.383e-1267.3960S ribosomal protein L29 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836203 ID=CF836203; Name=CF836203; organism=Citrus sinensis; type=EST; length=404bp
AATCTCTAGCACTTAAGCGAGCAGGGTCTTTTCCTGAAAACGAGATGGCC
CTTTCAAAGAATCACACAGCGCATAACCAGTCTTACAAGGCTCACAAGAA
CGGTATCAAGAAACCTAAGAAGCACCGCCACACTTCCACCAAAGGGATGG
ACCCAAAGTTCCTGAGGAACCAGAGGTATGCAAGGAAGCATAACAAGCAG
GGAGGTGAATCTGCTGCTGAGGAGTAGATGCTGTTATGGGGTTTTAATTA
CTTAGTTGTTAAGATTTTTTTAACCCCTTGAATGGATATCTGTTTTGTTT
TTGTTATTGTAGTGACTTGATGGCACTGTAGTGGGTTTCATTTCAATTTC
AAGTATCTGCTGAATCGTTAAGCTATGTTTGTTTACTGAAAAAAAAAAAA
AAAA
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