CF836212

Overview
NameCF836212
Unique NameCF836212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836212_ssr483 microsatellite CF836212_ssr483:483..494. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP3_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana GN=SAP3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.287e-26
Identity = 61/121 (50.41%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  318 MAEEHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLI---SSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTA----ANRCMTCXRRVGLTGFKCRCG 659
            MAEEHR Q PRLC NNCGFFGS  TQNLCSKCFRDLQ + Q SS+AKHAL Q+L    +++S  +S    P  D                  ++        RC+TC RRVG+TGF+CRCG
Sbjct:    1 MAEEHRLQEPRLCANNCGFFGSTATQNLCSKCFRDLQHQEQNSSTAKHALTQSLAAVGAAASSSVSPPPPPPADSKEIVEAKSEKRAAAEPEEADGPPQDPKRCLTCRRRVGITGFRCRCG 121          
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP6_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Arabidopsis thaliana GN=SAP6 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 60/128 (46.88%), Postives = 71/128 (55.47%), Query Frame = 3
Query:  318 MAEEHRCQAP---RLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSA-----KHALNQTLISSSSVDLS------LRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCMTCXRRVGLTGFKCRCG 659
            MAEEHRCQ P   RLCVNNCGF GS  T NLCS C+ DL LK QQ SS+     + +L+ +  SSSS ++S      L + P+                    Q    NRC TC +RVGLTGFKCRCG
Sbjct:    1 MAEEHRCQTPESNRLCVNNCGFLGSSATMNLCSNCYGDLCLKQQQQSSSIKSTVESSLSVSPPSSSSSEISSPIIPPLLKNPSVKLEVPEKKAVISLPTTEQNQQQRPNRCTTCRKRVGLTGFKCRCG 128          
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP4_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana GN=SAP4 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.959e-19
Identity = 54/124 (43.55%), Postives = 65/124 (52.42%), Query Frame = 3
Query:  318 MAEEHRCQAP---RLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTL-------ISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCMTCXRRVGLTGFKCRCG 659
            MAEEHRC+ P   RLCVNNCGFFGS  T NLCS C+ DL LK QQ +S K  +  +L       + + + +L +   P T                   Q    NRC  C +RVGLTGF CRCG
Sbjct:    1 MAEEHRCETPEGHRLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLSPVIAPVLENYAAELEI---PTTKKTEEKKPIQIPTEQPSPPQRP--NRCTVCRKRVGLTGFMCRCG 119          
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP1_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Arabidopsis thaliana GN=SAP1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.898e-16
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 3
Query:  345 PRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXXQS------TAANRCMTCXRRVGLTGFKCRCG 659
            P+LCV  CGFFGSP+  NLCSKC+RD++   +Q++SAK A+ ++L  +       + +  T                    +      + A RC++C ++VG+TGFKCRCG
Sbjct:   16 PKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQSQEITQGVLGSGSSSSSTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCG 126          
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP5_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Oryza sativa subsp. japonica GN=SAP5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.993e-15
Identity = 51/123 (41.46%), Postives = 62/123 (50.41%), Query Frame = 3
Query:  318 MAEEHRCQ--APRLCVNNCGFFGSPTTQNLCSKCFRDLQ-------LKAQQSSSAKHALNQTLISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCMTCXRRVGLTGFKCRCG 659
            MAEE R Q    RLC NNCGFFGSP T +LCSKC+RD Q       +    ++SA  A + +  SSSS    L    A +                      A+RC +C +RVGLTGF CRCG
Sbjct:    1 MAEEQRWQEGCHRLCANNCGFFGSPATLDLCSKCYRDRQGRESTAPVVVAAAASACPATHPSSPSSSSCPAFLPSSTAAEAGVVVAAV------------AKASRCASCRKRVGLTGFACRCG 111          
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP6_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Oryza sativa subsp. japonica GN=SAP6 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 50/118 (42.37%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  315 KMAEE---HRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCMTCXRRVGLTGFKCRCG 659
            K AEE   H  +AP LCVNNCGFFGS  T+N+CSKC+RD  +KA+  ++      + L S SS  L       TD                  +   +NRC++C ++VGLTGFKCRCG
Sbjct:    8 KEAEETGVHTPEAPILCVNNCGFFGSRMTENMCSKCYRD-TVKAKTVATVVE--KKPLASLSSTPLVTE---VTDGGSGSVADGKQVMEEDTPK-PPSNRCLSCRKKVGLTGFKCRCG 118          
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP9_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Oryza sativa subsp. japonica GN=SAP9 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14
Identity = 43/110 (39.09%), Postives = 55/110 (50.00%), Query Frame = 3
Query:  330 HRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCMTCXRRVGLTGFKCRCG 659
            H  +AP LCVNNCGFFGS  T N+CSKC+RD       ++        T  SSS   L     PA                    +   +NRC++C ++VGLTGF+CRCG
Sbjct:   15 HTPEAPILCVNNCGFFGSSMTNNMCSKCYRDFVKVTTMAAPVVEKKAFTPASSSKTPL----EPAKPDEVPAAAVEDKQAAQEPPK-PPSNRCLSCRKKVGLTGFQCRCG 119          
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP2_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Arabidopsis thaliana GN=SAP2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  339 QAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSS---------VDL---SLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCMTCXRRVGLTGFKCRCG 659
            + P+LC NNCGFFGS  T N+CSKC +D+  + +Q +    A++ T  SS+          VD+   S+     +                   +    +RC TC +RVGLTGFKCRCG
Sbjct:   13 EGPKLCTNNCGFFGSAATMNMCSKCHKDMLFQQEQGAKFASAVSGTSSSSNIIKETFTAALVDIETKSVEPMTVSVQPSSVQVVAEVVAPEEAAKPKGPSRCTTCNKRVGLTGFKCRCG 131          
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP9_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Arabidopsis thaliana GN=SAP9 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.230e-13
Identity = 39/122 (31.97%), Postives = 58/122 (47.54%), Query Frame = 3
Query:  327 EHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTA-----------ANRCMTCXRRVGLTGFKCRCG 659
            + +   P+LCV  CGFFGSP+  +LCSKC+R +  +  Q++ AK A+ ++   S    L + E PA                     S              NRC+ C ++VG+ GFKC+CG
Sbjct:   13 QSQASEPKLCVKGCGFFGSPSNMDLCSKCYRGICAEEAQTAVAKAAVEKSFKPSPPRSLFIAEPPAVVVEPKPEKAAVVVVSAEPSSSAVPEANEPSRPARTNRCLCCNKKVGIMGFKCKCG 134          
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP12_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 12 OS=Oryza sativa subsp. japonica GN=SAP12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 3
Query:  351 LCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAA----NRCMTCXRRVGLTGFKCRCG 659
            LC + CGFFGS  T N+CSKC+RD  LKA   +S   + + +  ++S+ D+++   PAT                    S AA    NRC+ C ++VGL GF+CRCG
Sbjct:   80 LCSSGCGFFGSKETNNMCSKCYRD-HLKA---TSPLFSSSSSPATASTTDITVPIAPATTAPTPSLKGKEEEATAAASSSAAAAAKPNRCVACRKKVGLLGFECRCG 182          
The following BLAST results are available for this feature:
BLAST of CF836212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SAP3_ARATH6.287e-2650.41Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP6_ARATH3.229e-2246.88Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ARATH1.959e-1943.55Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ARATH5.898e-1636.04Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP5_ORYSJ4.993e-1541.46Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP6_ORYSJ6.521e-1542.37Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP9_ORYSJ3.236e-1439.09Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP2_ARATH3.236e-1435.29Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP9_ARATH1.230e-1331.97Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP12_ORYSJ1.041e-1238.32Zinc finger A20 and AN1 domain-containing stress-a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836212 ID=CF836212; Name=CF836212; organism=Citrus sinensis; type=EST; length=659bp
TTTCTTACCAACATCCCAATTACCAAACAGAAGACAAAGGCTAATCCTCC
TTATATATTTCCTTTCCAGTCGTCCCTTTTTGAAAAATCAATCAATTTCA
GCAAATTATTCCTGAAAATATTGTTTACAGGTAATGATAAATTTTTGTAT
TAGTTTCTCATAAATAGTTTTTCTTTTTTTTTTTTTGGGTTAATCCATTA
ACTTGATTTCAAATAGGAATAATATGGATAAAATCGAAGTCTTATAAATT
TTTATATCAGTTTGCAAGATTTCAATCAACTGATTTGGAATGGAAAATTT
TGCTGTAAAGGTTGAAGATGGCGGAAGAGCACAGATGTCAAGCACCCCGT
TTGTGCGTGAACAACTGCGGATTTTTCGGGAGCCCAACAACTCAAAATCT
CTGCTCCAAATGTTTTCGCGATCTTCAGTTGAAAGCACAACAATCTTCCT
CGGCCAAACACGCCCTTAACCAAACCCTGATTTCGTCGTCGTCGGTTGAT
TTGTCTCTGCGCGAGAGACCGGCGACGGACGTGGAGGTAGCGGCAGAGGC
GGAGAAGCCGCCGGCTGAGGTGGCCGCTCCGGTGCAGTCGACGGCGGCGA
ACAGGTGCATGACTTGCANGAGGCGCGTGGGGCTCACGGGGTTCAAGTGC
AGGTGCGGG
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