CF838152

Overview
NameCF838152
Unique NameCF838152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8571 contig Csv1_Contig8571:651..1388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838152 vs. ExPASy Swiss-Prot
Match: PRT1_ARATH (E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = -2
Query:  507 IIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQPTSLSDLINRIN---SDMSDDEGSDATENRDG 737
            IIG+RY+CKDC E IG+DLC+ C+  P+KVPGRFNQQH P+H+ E+ +   +    N I      +  +EG D  E  +G
Sbjct:  319 IIGDRYRCKDCKEEIGYDLCKDCYETPSKVPGRFNQQHTPDHRLELARSPQVLINFNSIGILLGPVISNEGMDTDEGEEG 398          
The following BLAST results are available for this feature:
BLAST of CF838152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRT1_ARATH7.259e-1646.25E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05N08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838152 ID=CF838152; Name=CF838152; organism=Citrus sinensis; type=EST; length=738bp
TTTTTTTTTTTTTTTTTGTGTAAGAGTATAGTATTGAGTGAATTTCTTCA
TTCAGTGGTAAAATTAGAGTTGTGAACTCTACATCTCCACTTAACACGAA
GAACTAATTATGAGATCCGCACAAAATAAACAAATATAGGGAACATCAAA
GAAATGGAACTAATCTAGTACATAGCCATAGCCAAATTTCAAGATTTAAG
TTGTTAGGGGAATCTTTGTTTGTCTGGGCTGTGGTTAGGTAGTGGGGTAC
AATATTGGCCGCAGAAGGATGGGCGATTCACCTAAAGCCTTTCCACACAA
CAAATTCTAAGTATAGGTTTTAAGGTTTGGGAGTTGGTACCTTTCTATTC
TCATCAAGGGAAATCTGATGAACGTTCGTCAGAATCATCTTGTGGATCCA
GTGAGGCATCAACGGGCAAAAAAGAGGAAGAAACATCCTCCAGATCATTA
GTATCATTTTCTGGGTCTTCTGGAACATCACCTGACAAGTCGCCAGTTCG
AGCAACACCATCACGATTCTCTGTAGCATCTGAGCCTTCATCATCAGACA
TATCAGAATTGATCCTATTTATCAGATCACTTAAGCTTGTTGGTTGCATG
ATTTCAAACTTGTGTTCTGGTTTGTGCTGTTGATTGAATCGACCTGGAAC
CTTAGCAGGATTATTGTGGCATGCTTCACACAGGTCAAAACCTATTGACT
CCACACAGTCTTTGCATTTGTATCTCTCCCCAATTATA
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