CF838155

Overview
NameCF838155
Unique NameCF838155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838155_ssr48 microsatellite CF838155_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10886 contig Csv1_Contig10886:5..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 7.185e-106
Identity = 181/238 (76.05%), Postives = 201/238 (84.45%), Query Frame = 2
Query:  134 LISASDDA--TILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAP 841
            L+ ASDDA   I YES+DE FDGRWIVS K++Y GVWKH+KS+GH+DYGLLV E A+KYAIVKEL E +SLKDGTVVLQ+E RLQNGLECGGAY+KYLRPQE+GW  KEFDNESPY IMFGPDKCGATNKVHFI KHKNPKSGEY+EHHLK PPSVPSDKLTHVYTAILKPDNEL+ILIDGEEK+KANFL+++DF+PPLI                  RAKIPDP AVKP+DWDEDAP
Sbjct:   28 LVRASDDADDAIFYESFDEDFDGRWIVSDKEDYNGVWKHAKSDGHDDYGLLVSEQARKYAIVKELAESVSLKDGTVVLQFETRLQNGLECGGAYIKYLRPQESGWKPKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYPPSVPSDKLTHVYTAILKPDNELQILIDGEEKKKANFLSSEDFEPPLIPSKTIPDPDDKKPEDWDERAKIPDPSAVKPDDWDEDAP 265          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALX1_ARATH (Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 2.556e-103
Identity = 175/237 (73.84%), Postives = 196/237 (82.70%), Query Frame = 2
Query:  131 QLISASDDATILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAP 841
            Q +   DD T+LYES+DE FDGRWIVS+  +Y+GVWKH+KSEGHEDYGLLV E A+KY IVKELDEPL+LK+GTVVLQYEVR Q GLECGGAYLKYLRPQEAGW  + FD+ESPY IMFGPDKCG TNKVHFILKHKNPKSGEY+EHHLK PPSVP DKL+HVYTAILKPDNE+RIL+DGEEK+KAN L+ +DF+P LI                  RAKIPDP+AVKPEDWDEDAP
Sbjct:   20 QKLCYCDDQTVLYESFDEPFDGRWIVSKNSDYEGVWKHAKSEGHEDYGLLVSEKARKYGIVKELDEPLNLKEGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFGPDKCGGTNKVHFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANLLSGEDFEPALIPAKTIPDPEDKKPEDWDERAKIPDPNAVKPEDWDEDAP 256          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 3.338e-103
Identity = 175/235 (74.47%), Postives = 200/235 (85.11%), Query Frame = 2
Query:  137 ISASDDATILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAP 841
            I AS DA I YES+DESF+G WIVS+K++Y G WKHSKSEGH+DYGLLV + A+KYAIVKEL++P+ LKDGT+VLQYEVRLQNGLECGGAYLKYLRPQ+AGW +K FDNESPY IMFGPDKCGATNKVHFILKHKNPKSG+Y+EHHLK PPSVPSDKLTHVYTA++KPDNEL ILIDGEEK+KANFL+++DF+P LI                  RAKIPDP+A KP+DWDEDAP
Sbjct:   27 ICASSDA-IFYESFDESFEGSWIVSEKEDYPGEWKHSKSEGHDDYGLLVSDKARKYAIVKELEKPVELKDGTIVLQYEVRLQNGLECGGAYLKYLRPQDAGWTAKGFDNESPYSIMFGPDKCGATNKVHFILKHKNPKSGDYVEHHLKFPPSVPSDKLTHVYTAVIKPDNELVILIDGEEKKKANFLSSEDFEPALIPTKTIPDPDDKKPEDWDERAKIPDPEATKPDDWDEDAP 260          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 368.622 bits (945), Expect = 2.392e-101
Identity = 173/237 (73.00%), Postives = 195/237 (82.28%), Query Frame = 2
Query:  137 ISASDDATILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELD--EPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAP 841
            +S  DD TILYES+DE FDGRW+VS+K EY+GVWKH KSEGH+DYGLLV E AKKY IVKELD  EPL+L +GTVVLQYE R Q GLECGGAYLKYLRPQEAGWV + FDN+SPY IMFGPDKCGATNKVHFILKHKNPKSGE++EHHLK PPSVP D L+HVYTA+LK DNE+RIL+DGEEK+K N L+A+DF+PPLI                  RAKIPDP+AVKP+DWDEDAP
Sbjct:   22 VSYCDDQTILYESFDEPFDGRWVVSEKAEYQGVWKHEKSEGHDDYGLLVSEKAKKYGIVKELDVDEPLNLNEGTVVLQYEARFQEGLECGGAYLKYLRPQEAGWVPQGFDNDSPYSIMFGPDKCGATNKVHFILKHKNPKSGEFVEHHLKFPPSVPFDMLSHVYTAVLKSDNEVRILVDGEEKKKGNLLSAEDFEPPLIPSKTIPDPEDKKPEDWDERAKIPDPNAVKPDDWDEDAP 258          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 4.988e-99
Identity = 170/238 (71.43%), Postives = 196/238 (82.35%), Query Frame = 2
Query:  134 LISASD--DATILYESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAP 841
            L+ ASD  D  I YES+DE FD RWIVS K+EY GVWKHSKSEGH+D+GLLV EPA+KYAIVKELD P+SLKDGTVVLQ+E RLQNGLECGGAY+KYL+ QE+GW  K FDNES Y IMFGPD+CGATNKVHFI +HKNPK+G+++EHHLK PPSVPSDKL+HVYTA+LK DNE+ ILIDGEEK+KANFL+++DF+P LI                  RAKIPDP+AVKPEDWDEDAP
Sbjct:   29 LVRASDEVDDAIFYESFDEDFDNRWIVSGKEEYNGVWKHSKSEGHDDFGLLVSEPARKYAIVKELDAPVSLKDGTVVLQFETRLQNGLECGGAYIKYLQTQESGWKPKGFDNESGYSIMFGPDRCGATNKVHFIFRHKNPKTGKHVEHHLKFPPSVPSDKLSHVYTAVLKDDNEVSILIDGEEKKKANFLSSEDFEPALIPSKTIPDPDDKKPEDWDERAKIPDPEAVKPEDWDEDAP 266          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALX_ASPFU (Calnexin homolog OS=Aspergillus fumigatus GN=AFUA_4G12850 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.872e-46
Identity = 99/221 (44.80%), Postives = 131/221 (59.28%), Query Frame = 2
Query:  179 DESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAP 841
            D ++ G W V +     G+          D GL+V   A  +AI  +  + +  K  T+V+QYEV+ QN L CGGAY+K L+  +    ++EF N +PY+IMFGPDKCGATNKVHFI +HKNPK+GEY E H+  PP+  + KLT +YT I+KPD   +ILIDGE  +    L  +DF PP+                    AKIPDP+A KP+DWDEDAP
Sbjct:   77 DWAYVGEWAVEEPTVLNGMVG--------DKGLVVKNVAAHHAISAKFPKKIDNKGKTLVVQYEVKPQNSLVCGGAYMKLLQENKK-LHAEEFSNATPYVIMFGPDKCGATNKVHFIFRHKNPKTGEYEEKHMTAPPAARTTKLTTLYTLIVKPDQSFQILIDGEAVKNGTLL--EDFAPPVNPEKEIDDPKDKKPADWVDEAKIPDPEAKKPDDWDEDAP 286          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALX_PONAB (Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 7.320e-42
Identity = 101/242 (41.74%), Postives = 133/242 (54.96%), Query Frame = 2
Query:  170 ESYDESFDGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAP 841
            +S+D      WI+S+  KD+       Y G W     K SK  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+ECGGAY+K L       +  +F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN   IL+D       N L  +D  PP+                   R KIPDP+AVKP+DWDEDAP
Sbjct:   73 DSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKESKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLD-QFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLL--NDMTPPVNPSREIEDPEDRKPEDWDERPKIPDPEAVKPDDWDEDAP 309          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALX_MOUSE (Calnexin OS=Mus musculus GN=Canx PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.320e-42
Identity = 101/242 (41.74%), Postives = 133/242 (54.96%), Query Frame = 2
Query:  170 ESYDESFDGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAP 841
            +S+D      WI+S+  KD+       Y G W     K +K  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+ECGGAY+K L  + A     +F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN   IL+D       N L  +D  PP+                   R KI DPDAVKP+DWDEDAP
Sbjct:   74 DSFDRGSLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLS-KTAELSLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLL--NDMTPPVNPSREIEDPEDRKPEDWDERPKIADPDAVKPDDWDEDAP 310          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALX_HUMAN (Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 7.320e-42
Identity = 101/242 (41.74%), Postives = 133/242 (54.96%), Query Frame = 2
Query:  170 ESYDESFDGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAP 841
            +S+D      WI+S+  KD+       Y G W     K SK  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+ECGGAY+K L       +  +F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN   IL+D       N L  +D  PP+                   R KIPDP+AVKP+DWDEDAP
Sbjct:   73 DSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVEEMKESKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLD-QFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLL--NDMTPPVNPSREIEDPEDRKPEDWDERPKIPDPEAVKPDDWDEDAP 309          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALX_RAT (Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.130e-41
Identity = 100/242 (41.32%), Postives = 133/242 (54.96%), Query Frame = 2
Query:  170 ESYDESFDGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAP 841
            +S+D      WI+S+  KD+       Y G W     K +K  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+ECGGAY+K L  + +     +F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN   IL+D       N L  +D  PP+                   R KI DPDAVKP+DWDEDAP
Sbjct:   74 DSFDRGSLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLS-KTSELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLL--NDMTPPVNPSREIEDPEDRKPEDWDERPKIADPDAVKPDDWDEDAP 310          
The following BLAST results are available for this feature:
BLAST of CF838155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALX_SOYBN7.185e-10676.05Calnexin homolog OS=Glycine max PE=2 SV=1[more]
CALX1_ARATH2.556e-10373.84Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1... [more]
CALX_HELTU3.338e-10374.47Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
CALX2_ARATH2.392e-10173.00Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALX_PEA4.988e-9971.43Calnexin homolog OS=Pisum sativum PE=2 SV=1[more]
CALX_ASPFU2.872e-4644.80Calnexin homolog OS=Aspergillus fumigatus GN=AFUA_... [more]
CALX_PONAB7.320e-4241.74Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2[more]
CALX_MOUSE7.320e-4241.74Calnexin OS=Mus musculus GN=Canx PE=1 SV=1[more]
CALX_HUMAN7.320e-4241.74Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2[more]
CALX_RAT2.130e-4141.32Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05N09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838155 ID=CF838155; Name=CF838155; organism=Citrus sinensis; type=EST; length=841bp
CTTGGGTTGATTCATTTTAAGATTTAGATTCAGATCGCGGTCTCGGACTC
TCTCTCTCTCACACATGGTGCAGAGAATGGCTGTCTCTCTGCGGTTCGCT
CTCCTGCTTTTCGCTGCTTTCGTTTCATTTCAATTGATCTCCGCTTCTGA
TGATGCCACGATCTTGTACGAGTCGTATGACGAGTCGTTCGACGGACGAT
GGATCGTTTCTCAGAAAGATGAATACAAAGGTGTATGGAAGCATTCAAAG
AGTGAGGGTCATGAAGATTATGGCCTTCTTGTTGGTGAGCCGGCAAAGAA
GTACGCGATAGTGAAGGAGCTTGATGAGCCCCTGAGTTTGAAGGATGGAA
CTGTTGTCCTCCAGTATGAGGTTCGCCTCCAGAATGGTCTTGAATGTGGT
GGTGCATATCTGAAATACCTGCGGCCTCAGGAGGCAGGTTGGGTATCCAA
GGAGTTCGACAATGAATCTCCGTATATGATTATGTTTGGACCTGATAAAT
GTGGTGCAACAAACAAGGTGCACTTCATCTTAAAGCATAAGAATCCCAAG
AGTGGAGAGTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTC
TGATAAACTGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGT
TGAGAATTTTAATTGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCT
GCTGATGATTTTCAGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCC
AGATGACAAGAAGCCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACC
CTGATGCAGTAAAACCTGAAGACTGGGATGAGGATGCTCCC
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