CF838158

Overview
NameCF838158
Unique NameCF838158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5486 contig Csv1_Contig5486:129..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838158 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 7.038e-65
Identity = 129/179 (72.07%), Postives = 137/179 (76.54%), Query Frame = -2
Query:  240 LDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXAQGPGEKAVPAPQPAEGAKKA 776
            LDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTREARLPTK+             +KYRE+KKIDKHMYHDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN               A+GPG    P   PA  A  A
Sbjct:   24 LDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDVAPVAAPAPAATPA 202          
BLAST of CF838158 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 245.358 bits (625), Expect = 2.674e-64
Identity = 133/185 (71.89%), Postives = 143/185 (77.30%), Query Frame = -2
Query:  234 LDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXAQGPG---EKAVPAPQPAE-GAKKAKK 776
            LDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTREARLPTK+             +KYRE+KKID+HMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN               A+GPG     A P  Q AE  AKK+KK
Sbjct:   24 LDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDIPAAAPPAQTAEVPAKKSKK 208          
BLAST of CF838158 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.493e-64
Identity = 133/185 (71.89%), Postives = 137/185 (74.05%), Query Frame = -2
Query:  234 LDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXAQGP--GEKAVP--APQPAEGAKKAKK 776
            LDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKID+HMYHDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KN               AQGP  GE   P  APQ  E  KK  K
Sbjct:   24 LDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERLAQGPGGGETTTPAGAPQQPEVTKKKSK 208          
BLAST of CF838158 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.687e-48
Identity = 92/142 (64.79%), Postives = 109/142 (76.76%), Query Frame = -2
Query:  351 LDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 776
            LDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR R R+  EA+RKGRH G+GKRKGT  AR+PTK+             +KYR+SKKID+H+YHD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ EA+R K
Sbjct:   24 LDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQK 165          
BLAST of CF838158 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.643e-47
Identity = 92/142 (64.79%), Postives = 109/142 (76.76%), Query Frame = -2
Query:  351 LDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 776
            LDPNE NEI+ ANSRQ IRKLVKDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   24 LDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF838158 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.643e-47
Identity = 91/142 (64.08%), Postives = 109/142 (76.76%), Query Frame = -2
Query:  351 LDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 776
            LDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF838158 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.643e-47
Identity = 91/142 (64.08%), Postives = 109/142 (76.76%), Query Frame = -2
Query:  351 LDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 776
            LDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF838158 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.643e-47
Identity = 91/142 (64.08%), Postives = 109/142 (76.76%), Query Frame = -2
Query:  351 LDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 776
            LDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF838158 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 8.643e-47
Identity = 91/142 (64.08%), Postives = 109/142 (76.76%), Query Frame = -2
Query:  351 LDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 776
            LDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF838158 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.643e-47
Identity = 91/142 (64.08%), Postives = 109/142 (76.76%), Query Frame = -2
Query:  351 LDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 776
            LDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
The following BLAST results are available for this feature:
BLAST of CF838158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL191_ARATH7.038e-6572.0760S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL193_ARATH2.674e-6471.8960S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL192_ARATH3.493e-6471.8960S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL19_DROME2.687e-4864.7960S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_XENLA8.643e-4764.7960S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT8.643e-4764.0860S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB8.643e-4764.0860S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE8.643e-4764.0860S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA8.643e-4764.0860S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN8.643e-4764.0860S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05N13_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838158 ID=CF838158; Name=CF838158; organism=Citrus sinensis; type=EST; length=777bp
TTTTTTTTTTTTTTTCCACAGAGATAATGAACATAATACTCATCATTCAA
CATAACAAGAAACTACAAACGGTTCATATGGTTCCAAAATTCAAGGCTTT
ATAAGTAAATAATTTGCCATTAAACAGAAAACAAAATAACTTGGGAAACA
AACTCCTACAAAGAAACCAGAACCAACATTAACATATATAAGTTATCAAT
CTTCAGTCTCCATCATCGATGTATCAGCGATCACTTCTTAGCTTTCTTAG
CTCCCTCAGCTGGTTGGGGTGCTGGTACTGCCTTCTCTCCAGGTCCCTGT
GCTAGTCGCTCTTCTCTCCTGGCCAGCTTTCTCTCCCTGCTGGCCTTGTT
CTTGGCGCGCTTAGCCTCAAACTGGTCAGAAAGAGTCTTCTCTCTTGCCT
TTTCAGCCTTTGACTTGTGGATACTCTCCATGAGGACACGCTTGTTCTTA
AATACATTACCCTTGACCTTCATGTACATGTCATGGTACATGTGCTTGTC
AATTTTCTTCGACTCACGGTATTTGCGGAGCAACCGCCTGAGCACACGCA
TCCTTCTCATCCAGAGGATTTTGGTGGGAAGCCTCGCCTCCCTAGTACCC
TTTCTCTTACCATATCCAGAGTGACGGCCCTTCCTCTTGGCTTCCTTCAT
TCTGCGAGCGCGAGAACGGGAGTGGATCTTTGTTGGCTTCCTGATGATGA
AACCATCCTTCACCAATTTCCTAATGTTCTGCCTGGAGTTGGCCATGGAG
ATTTCGTTGACCTCATTAGGGTCAAGC
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