CF838161

Overview
NameCF838161
Unique NameCF838161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1269 contig Csv1_Contig1269:1..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838161 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNE7 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4)

HSP 1 Score: 227.639 bits (579), Expect = 5.673e-59
Identity = 127/244 (52.05%), Postives = 159/244 (65.16%), Query Frame = 3
Query:   39 LQSAAYDVLKSVGKLTNEELQNVFTEWNKG-ELLSFLIEITAXXXXXXXXXXXXY-LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYR 764
            L + AYD+LKSV  L   EL +VF  WNK  EL SFLIEITA              LV+ +LD  G KGTG+WTV+ A ++ VA PTI ++++AR LS +K ER  A+++       +    + D+Q  ID VR ALY SKICSYAQGM L+   S    + L LGELARIWKGGCIIRA FL++IK+AYD +  LANLL+ PEF + I+DRQ AWRRV+ +A   GI  P  S+SL YFDSYR
Sbjct:  196 LIAEAYDLLKSVAGLNASELHDVFAAWNKTPELDSFLIEITADIFTKVDDLGTGQPLVELILDAAGQKGTGRWTVETALEIGVAIPTIIAAVNARILSSIKAERQAASEILSGP---ITEPFSGDRQAFIDSVRDALYCSKICSYAQGMALLAKASQVYNYGLNLGELARIWKGGCIIRAGFLNKIKQAYDADPTLANLLLAPEFRQTILDRQLAWRRVIAIAAERGIPVPAFSASLDYFDSYR 436          
BLAST of CF838161 vs. ExPASy Swiss-Prot
Match: 6PGD2_BACSU (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4)

HSP 1 Score: 224.942 bits (572), Expect = 3.677e-58
Identity = 123/243 (50.62%), Postives = 158/243 (65.02%), Query Frame = 3
Query:   39 LQSAAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVD-KQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYR 764
            L S +Y +LK V  L+ +EL  VF EWNKGEL S+LIEITA             LVD +LDK G KGTGKWT Q A DL V  P I  S+ ARF+S +KEERV+A+ +      G +     + K++LI+ VR+AL+ SKICSYAQG   ++A S E  WDLK GE+A I++GGCIIRA FL +IK+AYDR  +L NLL+D  F   +   Q A R+V+ LA+  G+  P  SS+LAY+DSYR
Sbjct:  195 LISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTKKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKASGLLS----GPEVKPVTENKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYGEIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQGVPVPSFSSALAYYDSYR 433          
BLAST of CF838161 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNY3 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803) GN=gnd PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.825e-57
Identity = 123/243 (50.62%), Postives = 155/243 (63.79%), Query Frame = 3
Query:   39 LQSAAYDVLKSVGKLTNEELQNVFTEWNK-GELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYR 764
            L + AYD+LK+   L+NE+L  VF +WN+  EL SFLIEI+             +L+D +LD  G KGTG+WTV    +L V  PTI ++++AR +S LKEERV A+        G     + D +  I  VR ALY SK+CSYAQGM LI   S E G+D+ L E+ARIWKGGCIIRA FLD+IKKA+  N  L NLL+ PEF + I+DRQ  WR V+ LA   GI+ P  SSSL YFDSYR
Sbjct:  206 LIAEAYDILKNGLGLSNEQLHEVFGQWNQTDELNSFLIEISTDIFAKKDPETGGHLIDYILDAAGQKGTGRWTVMSGLELGVPIPTIYAAVNARVMSSLKEERVAASGQLS----GPSKTFSGDVEAWIPKVRDALYCSKMCSYAQGMALIAKASQEFGYDVNLPEIARIWKGGCIIRAGFLDKIKKAFKDNPQLPNLLLAPEFKQSILDRQGPWREVLMLANEMGIAVPAFSSSLDYFDSYR 444          
BLAST of CF838161 vs. ExPASy Swiss-Prot
Match: 6PGD_LACLA (6-phosphogluconate dehydrogenase, decarboxylating OS=Lactococcus lactis subsp. lactis GN=gnd PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 8.478e-55
Identity = 115/242 (47.52%), Postives = 156/242 (64.46%), Query Frame = 3
Query:   39 LQSAAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYR 764
            L + +YD+LK V  L+N E+Q +F EWN+GEL S+LIEIT             Y+VDK+LDK G KGTGKWT + A DL V  P I  S+ AR++S  K+ERV+A+KV      G   N + DK+++I+ +R+ALY SKI SYAQG   +R  S E  WDL  G +A+IW+ GCIIRA FL  I  A+D++++L NLL+D  F       Q A R VV LA+ +GI  P  +S+++Y+DSYR
Sbjct:  197 LIAESYDLLKRVLGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLS----GPAVNFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGIPIPTFTSAISYYDSYR 434          
BLAST of CF838161 vs. ExPASy Swiss-Prot
Match: 6PGD_STAES (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gnd PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.495e-54
Identity = 112/242 (46.28%), Postives = 155/242 (64.05%), Query Frame = 3
Query:   39 LQSAAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYR 764
            L + +Y ++K +  ++++E+   F EWN GEL S+LIEIT              LV+K+LD  G KGTGKWT   A +L V    I  S+ ARF+S +KEERV A+K  K    G +++   DK+  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLGELA IW+ GCIIRA FL +IK AYD N +L NLL+DP F   +++ Q A R VV  ++ +G+ TPG S+S+ Y+DSYR
Sbjct:  195 LIAESYAMMKDLLGMSHKEISQTFKEWNAGELESYLIEITGDIFNKLDDDNEA-LVEKILDTAGQKGTGKWTSINALELGVPLTIITESVFARFISSIKEERVTASKSLK----GPKAHFEGDKKTFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGELAMIWREGCIIRAQFLQKIKDAYDNNENLQNLLLDPYFKNIVMEYQDALREVVATSVYNGVPTPGFSASINYYDSYR 431          
BLAST of CF838161 vs. ExPASy Swiss-Prot
Match: 6PGD_STAEQ (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gnd PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.495e-54
Identity = 112/242 (46.28%), Postives = 155/242 (64.05%), Query Frame = 3
Query:   39 LQSAAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYR 764
            L + +Y ++K +  ++++E+   F EWN GEL S+LIEIT              LV+K+LD  G KGTGKWT   A +L V    I  S+ ARF+S +KEERV A+K  K    G +++   DK+  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLGELA IW+ GCIIRA FL +IK AYD N +L NLL+DP F   +++ Q A R VV  ++ +G+ TPG S+S+ Y+DSYR
Sbjct:  195 LIAESYAMMKDLLGMSHKEISQTFKEWNAGELESYLIEITGDIFNKLDDDNEA-LVEKILDTAGQKGTGKWTSINALELGVPLTIITESVFARFISSIKEERVTASKSLK----GPKAHFEGDKKTFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGELAMIWREGCIIRAQFLQKIKDAYDNNENLQNLLLDPYFKNIVMEYQDALREVVATSVYNGVPTPGFSASINYYDSYR 431          
BLAST of CF838161 vs. ExPASy Swiss-Prot
Match: 6PGD_SALTY (6-phosphogluconate dehydrogenase, decarboxylating OS=Salmonella typhimurium GN=gnd PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.224e-53
Identity = 118/242 (48.76%), Postives = 151/242 (62.40%), Query Frame = 3
Query:   39 LQSAAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYR 764
            L + AY +LK    L+NEEL N FTEWN GEL S+LI+IT             YLVD +LD+   KGTGKWT Q A DL      I  S+ AR++S LK +RV A+KV      G ++  A DK + I+ VR+ALY  KI SYAQG + +RA S E  WDL  GE+A+I++ GCIIRA FL +I  AY  NAD+ANLL+ P F K   + Q A R VV  A+ +GI  P  S+++AY+DSYR
Sbjct:  196 LIAEAYSLLKGGLNLSNEELANTFTEWNNGELSSYLIDITKDIFTKKDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKAQRVAASKVLS----GPKAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYHWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENADIANLLLAPYFKKIADEYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYR 432          
BLAST of CF838161 vs. ExPASy Swiss-Prot
Match: 6PGD_LACLM (6-phosphogluconate dehydrogenase, decarboxylating OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gnd PE=1 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 1.599e-53
Identity = 112/242 (46.28%), Postives = 155/242 (64.05%), Query Frame = 3
Query:   39 LQSAAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYR 764
            L + +YD+LK +  L+N E+Q +F EWN+GEL S+LIEIT             Y+VDK+LDK G KGTGKWT + A DL V  P I  S+ AR++S  K+ERV+A+KV      G   + + DK+++I+ +R+ALY SKI SYAQG   +R  S E  WDL  G +A+IW+ GCIIRA FL  I  A+D++++L NLL+D  F       Q A R VV LA+ +G   P  +S+++Y+DSYR
Sbjct:  197 LIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLS----GPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYR 434          
BLAST of CF838161 vs. ExPASy Swiss-Prot
Match: 6PGD_CITDI (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Citrobacter diversus GN=gnd PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.599e-53
Identity = 118/242 (48.76%), Postives = 151/242 (62.40%), Query Frame = 3
Query:   39 LQSAAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYR 764
            L + AY +LK    L+NEEL   FTEWNKGEL S+LI+IT             YLVD +LD+   KGTGKWT Q + DL      I  S+ AR++S LKE+RV A+KV      G ++  A DK + I+ VR+ALY  KI SYAQG + +RA S E  WDL  GE+A+I++ GCIIRA FL +I  AY  NA +ANLL+ P F K   D Q A R VV  A+ +GI  P  S+++AY+DSYR
Sbjct:  185 LIAEAYSLLKGGLNLSNEELAETFTEWNKGELNSYLIDITKDIFTKKDEEGK-YLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFARYISSLKEQRVAASKVLS----GPKAQLAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENAGIANLLLAPYFKKIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYR 421          
BLAST of CF838161 vs. ExPASy Swiss-Prot
Match: 6PGD_ECOLI (6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli (strain K12) GN=gnd PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 3.562e-53
Identity = 117/242 (48.35%), Postives = 149/242 (61.57%), Query Frame = 3
Query:   39 LQSAAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYR 764
            L + AY +LK    LTNEEL   FTEWN GEL S+LI+IT             YLVD +LD+   KGTGKWT Q A DL      I  S+ AR++S LK++RV A+KV      G Q+  A DK + I+ VR+ALY  KI SYAQG + +RA S E  WDL  GE+A+I++ GCIIRA FL +I  AY  N  +ANLL+ P F +   D Q A R VV  A+ +GI  P  S+++AY+DSYR
Sbjct:  196 LIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLS----GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYR 432          
The following BLAST results are available for this feature:
BLAST of CF838161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_SYNE75.673e-5952.056-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD2_BACSU3.677e-5850.626-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SYNY31.825e-5750.626-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_LACLA8.478e-5547.526-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAES5.495e-5446.286-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAEQ5.495e-5446.286-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SALTY1.224e-5348.766-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_LACLM1.599e-5346.286-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CITDI1.599e-5348.766-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_ECOLI3.562e-5348.356-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05N14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838161 ID=CF838161; Name=CF838161; organism=Citrus sinensis; type=EST; length=764bp
AGGGGAACTGCAAAATGTTTTCAGTACGTCATAAGCCTCTGCAATCAGCT
GCATATGACGTACTGAAATCTGTTGGAAAGTTGACAAATGAGGAACTGCA
AAATGTTTTCACAGAATGGAACAAGGGGGAGCTTCTCAGCTTCTTGATTG
AAATCACTGCAGATATTTTTGGAATAAAGGATGATAAGGGAGATGGTTAC
TTGGTTGACAAGGTTTTGGACAAAACAGGTATGAAGGGTACTGGCAAATG
GACTGTACAGCAAGCTGCTGATCTATCAGTTGCAGCTCCCACTATTGCAT
CTTCTTTGGATGCAAGGTTCCTTAGTGGTTTAAAGGAAGAAAGAGTTGAA
GCTGCCAAAGTCTTTAAATCAGGTGGCTTTGGTGTTCAGTCTAACCAAGC
TGTGGACAAGCAGAAGTTGATTGATGATGTGAGGCAGGCTCTTTATGCAT
CCAAGATATGTAGTTACGCACAGGGGATGAATCTTATTCGTGCAAAGAGT
ATTGAAAAAGGATGGGACTTGAAGTTGGGGGAACTGGCTAGGATTTGGAA
GGGGGGTTGCATTATCCGTGCTGTGTTCCTTGACAGAATCAAGAAGGCAT
ACGATAGGAATGCTGATCTGGCAAACCTTCTTGTGGACCCTGAGTTTGCA
AAGGAAATTGTTGATAGGCAGTCTGCCTGGCGAAGAGTTGTTTGCCTTGC
TATCAACTCGGGTATTAGCACACCTGGTATGTCATCCAGTCTTGCTTATT
TCGACTCATACAGA
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