CF838163

Overview
NameCF838163
Unique NameCF838163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length382
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF838163 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.602e-29
Identity = 68/131 (51.91%), Postives = 83/131 (63.36%), Query Frame = 1 
Query:    1 VRALTNDVHECDGLCDPDKENLCLDGHPNEAGXXXXXXXXXXXXXXXXALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGAR--LNRNERKRLFSLINDRPTACE--GETERKPIKDKPRVDRMSKS 381
            ++ALT DV E   LCDP+KENLCL GHPNE                   LGINFARDGM  KDWLSLVAVH+D+WLL+VAF+ GAR   ++ +RKRLF+++ND PT  E    T +K  KDK  V   S +
Sbjct:   27 IKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSN 157
The following BLAST results are available for this feature:
BLAST of CF838163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH3.602e-2951.91PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05N16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838163 ID=CF838163; Name=CF838163; organism=Citrus sinensis; type=EST; length=382bp
GTTCGCGCTTTAACTAACGATGTCCATGAATGTGACGGACTCTGCGATCC
AGATAAGGAGAATCTGTGCTTGGACGGCCATCCTAATGAGGCGGGGGAAG
TGACGTTGCCGGAAGAGGAGGTTCCGCCGGAGCTTCCTGAGCCGGCACTT
GGGATTAATTTTGCTAGAGATGGGATGAACAGGAAGGACTGGCTGTCTTT
GGTTGCGGTGCACACTGATTCATGGTTGCTTTCAGTGGCTTTTTATCTTG
GAGCTCGTCTTAACCGCAATGAAAGGAAACGACTGTTTAGCTTGATCAAT
GATCGACCTACTGCGTGTGAAGGTGAAACAGAAAGGAAGCCTATAAAGGA
TAAACCCAGGGTGGATAGAATGAGCAAATCTC
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