CF838176

Overview
NameCF838176
Unique NameCF838176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838176_ssr104 microsatellite CF838176_ssr104:104..113. BLAST: Citrus ESTs to Prunus persica proteins V1
CF838176_ssr144 microsatellite CF838176_ssr144:144..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5989 contig Csv1_Contig5989:515..1229. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF838176 vs. ExPASy Swiss-Prot
Match: FBK46_ARATH (F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = -1 
Query:  488 KNALRTGWVYDLRRDEWSELTQLSQERDECEGVVIGD--EFWVISGYNTENQGAFDGSADAYGFGSGQWKRVEGIW 709
            KNALR+  VYD+ +DEWS +T +++ RDEC+G  +G    F V+SGY TE+QG F    + Y   +  W R++ +W
Sbjct:  212 KNALRSAEVYDVEKDEWSSVTPMTEGRDECQGFAVGMGLRFCVLSGYGTESQGRFRSDGEIYDPATDSWSRIDNVW 287
[Close]
BLAST of CF838176 vs. ExPASy Swiss-Prot
Match: SKI20_ARATH (F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana GN=SKIP20 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = -1 
Query:  488 KNALRTGWVYDLRRDEWSELTQLSQERDECEGVVIGDE--FWVISGYNTENQGAFDGSADAYGFGSGQWKRVEGIW 709
            KNALR+  VYD+ +DEWS L  +++ RDEC G  +  +  F V+SGY TE QG F    + Y   +  W  +E +W
Sbjct:  219 KNALRSAEVYDVEKDEWSMLPPMTEGRDECHGFSMATDPGFCVLSGYGTETQGQFRSDGEIYDPITNSWSTIENVW 294
The following BLAST results are available for this feature:
BLAST of CF838176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBK46_ARATH4.924e-1443.42F-box/kelch-repeat protein At2g44130 OS=Arabidopsi... [more]
SKI20_ARATH1.027e-1142.11F-box/kelch-repeat protein SKIP20 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05O02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838176 ID=CF838176; Name=CF838176; organism=Citrus sinensis; type=EST; length=715bp
TTTTTTTTTTTTTTTTTACAAAGTGAGGTTCAAACAGAACACGCACTAAT
TTTTTGAGCCACTTCAAAAATTTAACCTTTTGTACAATTTCTAATTACAC
AAGATATATATATAAATAAGAAATGTAAAATTCACTACAAAACTATATAT
ATATGTCCCACAGATGTAAAATTCACTACAAAATTATATGTGACATACTT
TTCGGATCCATTTATTATTAAATCTCAACGCAGCAACCAGATTGAACAAA
CCCAAAAAATTCATCGGGCACATTGATTTTCTCCAATTTCACCTTTTGCC
CTTCCCCAATTTCCGCCAAATAAAACCCACTTGGAGCTCCTTGGTACTCC
GACCCGGTGACCAAAACCCGATCGCCCAACGCTACCCCGCATAACCCGGC
CCGTACAACGGAGTCTAGCTCGGACCAACTAAATATCCTCCCATCTTTGC
CCACCCCAACGTTGGATCTCGGGCACCGACCAGCCTCCCAAATCCCTTCC
ACCCGCTTCCATTGACCGGATCCGAACCCGTAAGCGTCGGCGCTTCCATC
GAAAGCCCCTTGATTCTCGGTGTTATACCCGCTAATTACCCAAAACTCAT
CCCCTATCACCACCCCCTCACATTCGTCTCGCTCTTGACTCAACTGAGTC
AACTCACTCCACTCGTCCCGCCTCAAATCATAGACCCACCCCGTCCTCAG
CGCGTTCTTATTCTG
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