CF838310

Overview
NameCF838310
Unique NameCF838310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:248..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF838310 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.532e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:   34 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 396
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CF838310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.532e-2853.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06C24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838310 ID=CF838310; Name=CF838310; organism=Citrus sinensis; type=EST; length=821bp
TTAGAAACTAGCAGCTAAATTGTAAATTTAAAGATGCTAGAGAAGCTTTG
GGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCTGA
GGAAAATCACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGAGGCGGAG
TCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGG
GGCACCGTCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGG
ACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGG
GGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCCAC
TGTTTATGACTGGCTTTACAGTGGGGAGACTAGGAGCAAGCATCATCACT
GAGTGGATGATACGCTCCAGCGATGTAAATGAATGTGATGGGTCACCAAC
TCACCGGATGAGTTGCCTGTAGTCTGTAGATAGTGTCGTTTCGTTTTGGA
TTTCGCAACGTGTCCTTGTCGTTTTGTTAATGCTATTTGTATTACGTGTC
CTTCCTATCTAAAGTTTGGTTTTAAAATGCTGCTGACTAAAAGTAAACTA
AAGACTGTGATGTTTTTATATCATATAATTTAATAATTGTATGTGATGTG
AGGATTGCTAAGCTGTGGGCGGAGATGAAAGGTTGCTGGTTTTTGGGTTT
AGGACATGTTTTTGATTGTCATTTTGTAAGAGCCAAGATCATCCCTTCGT
GGACGGTCGTGATGAGCATATATGTTTTATTATTAATAAATAAGTTGCTT
CTCTGAAAAAAAAAAAAAAAA
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