CF838320

Overview
NameCF838320
Unique NameCF838320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838320_ssr118 microsatellite CF838320_ssr118:118..129. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1292 contig Csv1_Contig1292:1..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.819e-72
Identity = 131/219 (59.82%), Postives = 150/219 (68.49%), Query Frame = 3
Query:  195 SIVNSSRCRDIPQKRFTEKITKCLVGRGGVIVNATKGVSSVCEPLPPDRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            SIV +++   +  KR         VG   V V+A            PDRPLWFPGSTPP WLDG LPGD+GFDPLGLGSDPE LKW AQAEL+H RWAML  AGI IPE+L  IG++   SWY AG +EYF D TTLFV++L L+GW EGRRWADII PGCV+  P  PN      DVGYPGG+WFDP+ WG GSP  +  LRT EIKNGRLAMLA +G
Sbjct:   25 SIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAA--------DPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.480e-71
Identity = 120/184 (65.22%), Postives = 137/184 (74.46%), Query Frame = 3
Query:  300 KGVSSVCEPLPPDRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            +  ++VC    PDRPLWFPGSTPP WLDG LPGD+GFDPLGL SDPE L+W  QAEL+H RWAML  AGI IPE L  IG++   SWY AG +EYF D TTLF+V+L L+GW EGRRWADII PGCV+  P  PN      DVGYPGG+WFDP+ WG GSP  +  LRT EIKNGRLAMLA +G
Sbjct:   52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.515e-45
Identity = 91/168 (54.17%), Postives = 111/168 (66.07%), Query Frame = 3
Query:  348 WFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            W PG   P +L G LPGD GFDPLGL  DPE L+WF QAEL++GRWAML VAG+L+PE   SIG+I    WY AG  EYFA  +TLFV++  L  +VE RRW DI NPG V+  P     + P  +VGYPGGI F+P+ +      P +  +  EI NGRLAMLAF+G
Sbjct:   56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFA-----PTLEAKEKEIANGRLAMLAFLG 217          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.203e-45
Identity = 90/168 (53.57%), Postives = 110/168 (65.48%), Query Frame = 3
Query:  348 WFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            W PG   P +L G L GD GFDPLGL  DPE LKWF QAEL++GRWAML VAG+L+PE    IG+I    WYDAG  +YFA  +TLFV++  L  +VE RRW DI NPG V+  P     + PK +VGYPGGI F+P+ +      P    +  E+ NGRLAMLAF+G
Sbjct:   57 WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLG 218          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.079e-32
Identity = 77/169 (45.56%), Postives = 102/169 (60.36%), Query Frame = 3
Query:  348 WFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYD-AGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            W PG   P++LDG L GD GFDPL L  DPE L+WF QA++++GRWAML VAG+LIPE L   GL+    W    G   YFA  +T   V ++   +VE RRW DI NPG V+  P   + + P  + GYPG + F+P+ +        +  +  E+ NGRLAMLAF+G
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMS-STYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRV-FNPLNFA------PLENKEKELANGRLAMLAFLG 196          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.139e-32
Identity = 83/189 (43.92%), Postives = 112/189 (59.26%), Query Frame = 3
Query:  336 DRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELL------KWFAQAELIHGRWAMLAVAGILIPEWLESIGLIEN---FSWYD------AGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQ--PDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            DRPLWF      S+LDG LPGDYGFDPLGL SDPE        +W A  E+I+GR+AML   G + PE+L  +GLI      +W+       AG+  Y+AD  TLFV+++ALMG+ E RR+ D   PG +  Q    L        +  YPGG +F+P+ +G+   + +  L+  E+KNGRLAMLA +G
Sbjct:   54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGK-DEKSLKELKLKEVKNGRLAMLAILG 240          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.193e-31
Identity = 99/250 (39.60%), Postives = 132/250 (52.80%), Query Frame = 3
Query:  171 TILLLFSCSIVNSSRC-RDIPQKRFTEKITKCLVGRGGVIVNATKGVSSVCEPLPP-----DRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELL------KWFAQAELIHGRWAMLAVAGILIPEWLESIGLIEN---FSWYD------AGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQ--PDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            T  L+ S SI  S+   R I   R ++ +T+    +   +V A           PP     +R LWF      S+LDGRLPGD+GFDPLGL SDPE        KW A  E+I+GR+AML  AG + PE L   GLI      +W+       AG+  Y+AD  TLFV+++ALMG+ E RR+ D   PG +  Q    L        D  YPGG  F+P+ +G+   + +  L+  EIKNGRLAMLA +G
Sbjct:    3 TQALISSSSISTSAEAARQIIGSRISQSVTR----KASFVVRAAS--------TPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGK-DEKSMKELKLKEIKNGRLAMLAILG 238          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.558e-31
Identity = 78/177 (44.07%), Postives = 100/177 (56.50%), Query Frame = 3
Query:  369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADP---TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLP------NKTKPKPDVGYPGGIWFDPMMW------GRGSPEPVMV--LRTXEIKNGRLAMLAFV 848
            P WLDG LPGD+GFDPLGLG DP  LKW+ +AELIHGRWAMLAV GI + +    I       W++AG+      P    TL   QL LMGWVE +RW D  +P    ++   P      N +    + GYPGG +FDP+        G  +P+   +  L+  EIK+ RLAMLA +
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAML 243          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.657e-31
Identity = 78/177 (44.07%), Postives = 95/177 (53.67%), Query Frame = 3
Query:  369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADP---TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLP------NKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMV--------LRTXEIKNGRLAMLAFV 848
            P WLDG LPGDYGFDPLGLG DP  LKW+ +AELIHGRWAM AV GI + +    I       W++AG+      P    TL   QL LMGWVE +RW D  +P    ++   P      N      + GYPGG +FDP+         V V        L+  EIK+ RLAMLA +
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAML 238          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.242e-29
Identity = 76/177 (42.94%), Postives = 93/177 (52.54%), Query Frame = 3
Query:  369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADP---TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLP------NKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMV--------LRTXEIKNGRLAMLAFV 848
            P WLDG LPGD+GFDPLGLG DP  LKW+ +AELIHGRWAM AV GI + +    I       W++AG+      P    +L   QL LMGWVE +RW D  +     I    P      N      + GYPGG +FDP+         V V        L+  EIK+ RLAMLA +
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAML 238          
The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB12_PETHY1.819e-7259.82Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC4.480e-7165.22Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA5.515e-4554.17Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH7.203e-4553.57Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU1.079e-3245.56Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB23_PEA3.139e-3243.92Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC1.193e-3139.60Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB4_SPIOL1.558e-3144.07Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC2.657e-3144.07Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC4.242e-2942.94Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bp
CGACTGAGCAAACCTTTGTCATCTTCATTCTCATCCATGGCCCTAGCCAT
TGCTTCTACAGCACTTTCGACCCTCCCATTCAGGTCACATACACAACAAT
TTCTTTAATTATGAAGAATTATTATTATTACATTGAATGGATATAGATTT
ATTGTCTTTCATGCATTGAAACAATTCTCCTGCTATTTTCCTGTTCAATC
GTGAACAGCAGCAGGTGCAGGGACATACCTCAGAAACGTTTTACAGAGAA
GATTACAAAATGCCTAGTGGGAAGAGGTGGTGTGATAGTGAATGCAACAA
AAGGAGTGTCAAGTGTTTGTGAACCGCTCCCTCCGGACAGACCATTGTGG
TTCCCTGGCAGCACACCGCCCTCTTGGCTTGATGGGAGGCTTCCGGGAGA
TTATGGCTTCGATCCTCTTGGATTAGGGTCTGATCCAGAGTTGCTTAAAT
GGTTTGCTCAAGCTGAGCTAATTCACGGCAGGTGGGCAATGCTGGCTGTG
GCTGGAATCCTCATACCAGAATGGCTTGAAAGCATTGGCCTCATTGAGAA
CTTCTCATGGTACGATGCTGGTTCTCGTGAATACTTTGCAGACCCCACAA
CTTTATTTGTGGTTCAGTTGGCCCTGATGGGATGGGTAGAAGGCAGAAGA
TGGGCTGATATAATTAATCCAGGATGTGTTGACATTCAACCAGATCTCCC
AAACAAGACAAAGCCGAAGCCAGATGTTGGCTACCCTGGTGGGATATGGT
TTGATCCCATGATGTGGGGAAGAGGGTCCCCAGAGCCTGTGATGGTGTTG
AGGACTANGGAAATAAAGAATGGGCGTCTTGCTATGCTAGCTTTCGTTGG
CT
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