CF838324

Overview
NameCF838324
Unique NameCF838324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10323 contig Csv1_Contig10323:138..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF838324 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 2 
Query:  278 IDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXXXXXXXXXV-TCGKTPPAGFTC 517
            ID LKLGACVD+LGGL+HIG+G      CCP+L GLV+L+AA+                        +  CGK PP  F C
Sbjct:  263 IDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343
The following BLAST results are available for this feature:
BLAST of CF838324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC2.278e-1143.2136.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06D19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838324 ID=CF838324; Name=CF838324; organism=Citrus sinensis; type=EST; length=709bp
CCATTCTTGGCCCTTTTACGTGTGGCAAGCCGCACCCGAAGCACAGGAAA
CCTCCGCAGCCTAGACCCATGCGGTCTTCCTCCCATTGGCAAACCCCCAG
TTCCCTTGCCACCAGTCACTCTCCCTCCGGTGACCGTCCCAGCCGATCAA
GCCACCAGTCGACCTCCCCACTCTCCCACCAGTTGCACTGCCTCCAGTTC
TCCCTAATCCACCAAGTGCTAGGAAGCCATGCCCATGTTCATACACACCA
CCTCCACCAGCGGCTGCCACATGCCCCATTGACACCCTCAAATTGGGTGC
TTGTGTGGACCTTCTTGGTGGGTTGGTTCACATTGGTCTTGGTGACCCAG
TTGTTAACCAATGCTGCCCAGTTCTACAAGGACTTGTTGAGTTAGAAGCT
GCTGTCTGCTTGTGCACTACTCTCAAGCTCAAGCTGCTTAATCTTAACAT
CTATCTTCCACTTGCTCTTCAGCTTCTTGTCACTTGCGGAAAGACACCAC
CCGCTGGTTTCACTTGCACTCTTTAGATCTAAGGTTGGTAGATTGATGAT
GGATACTGAAGGAAGAAATCGACATGAAAGGATGTCGAGACTTATTTGTT
TGTTTCTTTTTCTCTCTCCCCCACTCTCTCTGTGTTTCTCTCATTGTTGG
GATTGTAATGTTTGGTCACATTTAATTGTACACCCATTTGTTTTTATATG
ATTTGTCGC
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