CF838325

Overview
NameCF838325
Unique NameCF838325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838325_ssr508 microsatellite CF838325_ssr508:508..519. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1268 contig Csv1_Contig1268:85..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838325 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.505e-57
Identity = 102/144 (70.83%), Postives = 120/144 (83.33%), Query Frame = 1
Query:   19 MGRFGLCV-ILSLCLLVATASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLYLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 447
            +  + LCV +L + +++A A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGL LD  VF +LDTNG+GYQQG LTV+YEFVNCND
Sbjct:    4 VNNYKLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CF838325 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.758e-57
Identity = 101/144 (70.14%), Postives = 119/144 (82.64%), Query Frame = 1
Query:   19 MGRFGLCV-ILSLCLLVATASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLYLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 447
            +  + LCV +L + +++A A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGL LD  VF +LDTNG+GYQQG L V+YEFVNCND
Sbjct:    4 VNNYKLCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CF838325 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.116e-52
Identity = 93/137 (67.88%), Postives = 111/137 (81.02%), Query Frame = 1
Query:   34 LCVILSLC-LLVATASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLYLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 441
            LCV   +  +++A A+AQSA+NVRATYHLY+P+ I WDL  AS +CATWDA KPL WR++YGWTAFC   GP GQA+CGRCLRVTN+GTG Q+ VRIVDQC NGGL LD  VF +LDTNG+GYQ+G L V+YEFVNC
Sbjct:    7 LCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of CF838325 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.489e-49
Identity = 94/141 (66.67%), Postives = 105/141 (74.47%), Query Frame = 1
Query:   34 LCVILSLCLLVATASAQSASNVRATYHLYHPEQIGWDL--TAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLYLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 447
            + V   LC   A A+AQ A+NVRATYH Y P Q  WDL   A SA+CATWDASKPL+WR KYGWTAFC   G  GQAACG+CLRVTN  TGAQ   RIVDQCANGGL LD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:    8 MLVAALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of CF838325 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.668e-48
Identity = 92/141 (65.25%), Postives = 106/141 (75.18%), Query Frame = 1
Query:   34 LCVILSLCLLVATASAQSASNVRATYHLYHPEQIGWDL--TAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLYLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 447
            + V+  LC   A A+AQ A+NVRATYH Y P Q  WDL   A SA+CATWDASKPL+WR KYGWTAFC   G  GQA+CG+CL+VTN  TGAQ   RIVDQCANGGL LD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:    6 MLVVALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of CF838325 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.367e-47
Identity = 81/121 (66.94%), Postives = 100/121 (82.64%), Query Frame = 1
Query:   85 SASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLYLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 447
            SA NVRATYH+Y+P+ +GWDL A SA+C+TWDA+KP AWR KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGL LD  VF+++DT+G+G QQG L V+Y+FVNC D
Sbjct:   78 SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CF838325 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.664e-46
Identity = 88/125 (70.40%), Postives = 98/125 (78.40%), Query Frame = 1
Query:   82 QSASNVRATYHLYHPEQIGWDL--TAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLYLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 447
            Q A++VRATYH Y P Q  WDL   A SA+CATWDASKPL+WR KYGWTAFC   GP GQAACG+CLRVTN  TGAQ   RIVDQCANGGL LD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:    1 QQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CF838325 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.012e-45
Identity = 79/121 (65.29%), Postives = 100/121 (82.64%), Query Frame = 1
Query:   85 SASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLYLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 447
            SA NVRATYH+Y+P+ +GWDL A SA+C+TWDA+KPL+WR+KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGL LD  VF+++DT+G G  QG L V+Y+FV+C D
Sbjct:   79 SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199          
BLAST of CF838325 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.561e-45
Identity = 79/121 (65.29%), Postives = 100/121 (82.64%), Query Frame = 1
Query:   85 SASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLYLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 447
            SASNV ATYHLY+ +  GWDL AASA+C+TWDA+KP +WR KYGWTAFC   G  GQ++CG+CL VTN+GTGA+  VRIVDQC+NGGL LD  VF++LDT+G GY++G +TV+Y+FV+C D
Sbjct:   69 SASNVLATYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of CF838325 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.909e-44
Identity = 79/122 (64.75%), Postives = 94/122 (77.05%), Query Frame = 1
Query:   82 QSASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLYLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 447
            +SASNVRATYH Y+P Q  WDL A SA+C+TWDA KP AWR KYGWTAFC   GP GQA+CG+CLRV N+ T A   VRIVDQC+NGGL LD  +F ++DT+G GYQQG L V Y+FV+C +
Sbjct:   72 ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193          
The following BLAST results are available for this feature:
BLAST of CF838325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PR4A_TOBAC1.505e-5770.83Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC9.758e-5770.14Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC1.116e-5267.88Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WHW2_WHEAT7.489e-4966.67Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT1.668e-4865.25Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
WIN2_SOLTU5.367e-4766.94Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
BARW_HORVU2.664e-4670.40Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WIN1_SOLTU1.012e-4565.29Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
HEVE_HEVBR6.561e-4565.29Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
HEVL_ARATH1.909e-4464.75Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838325 ID=CF838325; Name=CF838325; organism=Citrus sinensis; type=EST; length=684bp
AAAAATTAACACAATAATATGGGGAGGTTCGGTCTTTGTGTGATTCTGTC
ACTTTGTCTACTGGTGGCCACTGCTTCTGCCCAAAGTGCTTCTAATGTGA
GAGCCACGTATCATCTCTACCACCCTGAGCAAATTGGATGGGACTTGACG
GCAGCGAGCGCTTTCTGCGCAACATGGGATGCCAGCAAGCCCTTGGCCTG
GCGCCAGAAATATGGCTGGACCGCTTTCTGTCATTCGGGCGGACCCATTG
GACAAGCTGCTTGTGGCAGGTGCTTAAGGGTCACAAACAGTGGTACAGGA
GCCCAACAAATTGTGAGAATTGTTGATCAGTGTGCCAATGGAGGCTTATA
TTTGGACGAAGGAGTGTTCAAGAAATTGGACACCAATGGAATAGGCTATC
AACAAGGCTTCCTTACTGTCAGCTACGAGTTTGTGAACTGCAATGATTAA
AGCACCATCTATAATTCCATGATCGATCGAAGCTTATTGCTGTAATAGGG
TTAATTTATTAATTAATTATCCCTCTATATATTTAGTTCATAAATAAAAT
AAACTTCTGATGAAGTATCAAGAAGTGCTCATGGGCACTACAGTTATGTA
ATAAAAGTTTCCTTTTTTTATCCCTTTACATTTTCTTGAATTTAAATACC
TTTAGTCGATTGAACATAAAATTAAAGAAAAAAA
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