CF838389

Overview
NameCF838389
Unique NameCF838389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838389_ssr292 microsatellite CF838389_ssr292:292..303. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.452e-31
Identity = 91/219 (41.55%), Postives = 110/219 (50.23%), Query Frame = 2
Query:    2 KSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF--------------XXXXXXXXXXXXKKRCMPS---PELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQ-PRAVDDEFELSQQISSLESFLGLEPLMSQPSGNGAGGYDSVDFWMLDDVAATQQ 604
            K HP   + VK E  +    + A   GK +K    RKNVYRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT            K+IRGDKAKLNF                          KK C+ S    EL+QP F          P   +GFG  +EF       + +++L QQISSLESFL L+   ++           VD WMLDDV A+ +
Sbjct:   47 KLHPTNQVNVKEEAVK---KEQATEPGKRRK----RKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSF----------PVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLESFLELDGNTAEQPSQLDESVSEVDMWMLDDVIASYE 248          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.405e-18
Identity = 50/95 (52.63%), Postives = 57/95 (60.00%), Query Frame = 2
Query:    2 KSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            +S P Q   V + K     + +   +GK     R RKN+YRGIRQRPWGKWAAEIRDP KGVRVWLGTF T             +IRG KAKLNF
Sbjct:   16 ESEPSQLGSVSSRKKRKPVSVSEERDGK-----RERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF 105          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.140e-18
Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = 2
Query:   89 KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            K  +R RKN +RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+            +RIRG KAK+NF
Sbjct:  110 KSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNF 175          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.102e-18
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   77 EGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            E  EK ++R RKN YRGIRQRPWGKWAAEIRDP KG R WLGTF+T            +RIRG KAK+NF
Sbjct:  114 EQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNF 183          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.357e-18
Identity = 42/67 (62.69%), Postives = 46/67 (68.66%), Query Frame = 2
Query:   86 EKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            EK   R RKN YRGIRQRPWGKWAAEIRDP +G R+WLGTF T            +RIRG KAK+NF
Sbjct:  114 EKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNF 180          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.472e-17
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   77 EGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            +GK+K++ R     Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT            KRIRG KAKLNF
Sbjct:   16 DGKKKQSSR-----YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNF 80          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.319e-16
Identity = 58/141 (41.13%), Postives = 68/141 (48.23%), Query Frame = 2
Query:   83 KEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNFXXXXXXXXXXXXKKRCMPSPELTQPRFETIGTPPAPAP--SPWVGFGYQNEFYQPRAVDDEFELSQQISSLES 499
            +EK   R R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T               RG KAKLNF              +  PSP  +  R   I TPP+P P  +P +       F Q R+ D    LS  + S  S
Sbjct:   60 QEKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNF-----PEHIRVNPTQLYPSPATSHDRI--IVTPPSPPPPIAPDILLDQYGHF-QSRSSDSSANLSMNMLSSSS 190          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.319e-16
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   47 EDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            E+S +KA   E +EKK +      YRG+RQRPWGKWAAEIRDP++  RVWLGTF+T             R RG+KAKLNF
Sbjct:   59 EESMSKAFPEEAREKKRR------YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNF 132          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15
Identity = 37/60 (61.67%), Postives = 39/60 (65.00%), Query Frame = 2
Query:  107 RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            R   YRG+RQRPWGKWAAEIRDP+K  RVWLGTF T             R RG KAKLNF
Sbjct:   57 RPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNF 116          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.106e-14
Identity = 36/61 (59.02%), Postives = 40/61 (65.57%), Query Frame = 2
Query:  104 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            +RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             + +G KAKLNF
Sbjct:   87 LRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147          
The following BLAST results are available for this feature:
BLAST of CF838389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RAP23_ARATH1.452e-3141.55Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH2.405e-1852.63Ethylene-responsive transcription factor ERF071 OS... [more]
ERF1_ORYSJ3.140e-1865.15Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP22_ARATH4.102e-1862.86Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH5.357e-1862.69Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF73_ARATH3.472e-1761.43Ethylene-responsive transcription factor ERF073 OS... [more]
EF112_ARATH1.319e-1641.13Ethylene-responsive transcription factor ERF112 OS... [more]
EF110_ARATH1.319e-1653.75Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH9.456e-1561.67Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF115_ARATH2.106e-1459.02Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838389 ID=CF838389; Name=CF838389; organism=Citrus sinensis; type=EST; length=811bp
CAAATCCCACCCTAAGCAACCTCTCAAAGTGAAAAATGAGAAGGCTGAAG
ATTCAAGCAATAAAGCTGCTCGTGTTGAGGGGAAGGAGAAGAAGACTCAG
CGAGTTCGCAAGAACGTGTACAGAGGAATACGGCAGAGGCCGTGGGGAAA
ATGGGCAGCTGAAATTAGAGACCCTTACAAGGGCGTCCGCGTTTGGCTCG
GCACTTTCAACACAGCCGAAGAAGCCGCAAGAGCTTATGATGAAGCCGCC
AAGCGTATCCGCGGCGACAAGGCCAAGCTCAACTTCGCTCAGCCGCCGCC
GCCAATAGCTCCACCCCCAGCTAAGAAACGCTGCATGCCATCCCCTGAGT
TGACTCAGCCGAGATTTGAAACCATCGGAACCCCACCGGCTCCGGCGCCG
TCCCCGTGGGTGGGGTTTGGGTATCAGAATGAGTTTTATCAACCCAGGGC
AGTAGACGACGAGTTTGAGCTGAGCCAGCAAATTTCGAGCTTGGAATCGT
TTTTGGGATTGGAGCCATTAATGAGTCAGCCGAGTGGAAACGGTGCTGGT
GGGTATGACTCGGTGGACTTTTGGATGCTTGATGACGTGGCGGCGACTCA
GCAGCTGAACAGCAATCAGTTCTTGTGTTAGGAAAAATAATAATAAACGA
ATTGAGTTGTGGCCGTGCTGTGTGTTCGTGTGGGTCTGTGTATTGAGTTA
TAGTGTTTAATGCTGTTTATGTAGTTTTGATTTTGTGTTTATGTTGTTAA
TGACTTTGTTTATTTTAATTTGTGTTTTATGTTGTTAATGACTCGATACT
TAATTACGTAA
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