CF838400

Overview
NameCF838400
Unique NameCF838400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838400_ssr470 microsatellite CF838400_ssr470:470..487. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1276 contig Csv1_Contig1276:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML7_ARATH (Calmodulin-like protein 7 OS=Arabidopsis thaliana GN=CML7 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.383e-30
Identity = 71/159 (44.65%), Postives = 96/159 (60.38%), Query Frame = -3
Query:  252 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 728
            ELKRVF  FDK+GDG IT  EL E+LR+L + + D E  +M+ K+D NGDG ++ DEF  LY+ +M  + +E+                                G I+V+EL  VLS+LGL +G  +++CKKMI+KVDVDGDG VN+ EFR+MMK GG
Sbjct:    5 ELKRVFQMFDKNGDGTITGKELSETLRSLGIYIPDKELTQMIEKIDVNGDGCVDIDEFGELYKTIMDEEDEEEEDMKEAFNVFDQNGD-----------------GFITVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDGRVNYKEFRQMMKGGG 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML2_ARATH (Calmodulin-like protein 2 OS=Arabidopsis thaliana GN=CML2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.609e-29
Identity = 70/161 (43.48%), Postives = 96/161 (59.63%), Query Frame = -3
Query:  252 KGELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 734
            +GEL RVF  FDK+GDG I K EL +  +++ +MV + E  EM+AK+D NGDG ++ DEF  LY+ M+    +E+                               DG I+ EEL  VL+++GL +G  +E+CKKMI KVDVDGDGMVNF EF++MM+ GG
Sbjct:    3 RGELSRVFQMFDKNGDGKIAKNELKDFFKSVGIMVPENEINEMIAKMDVNGDGAMDIDEFGSLYQEMVEEKEEEE------------------DMREAFRVFDQNGDGFITDEELRSVLASMGLKQGRTLEDCKKMISKVDVDGDGMVNFKEFKQMMRGGG 145          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.914e-29
Identity = 68/161 (42.24%), Postives = 95/161 (59.01%), Query Frame = -3
Query:  252 KGELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 734
            + EL R+F  FD++GDG ITK EL +SL NL + + D +  +M+ K+D NGDG ++ +EF  LY+ +M    +E+                                G I+VEEL  VL++LGL +G  +E+CK+MI KVDVDGDGMVNF EF++MMK GG
Sbjct:    3 QAELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIEEFGGLYQTIMEERDEEEDMREAFNVFDQNRD------------------GFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMMKGGG 145          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML5_ARATH (Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 69/164 (42.07%), Postives = 94/164 (57.32%), Query Frame = -3
Query:  252 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMM-----GGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 728
            ELKRVF  FDK+GDG ITK EL +SL NL + + D +  +M+ K+DANGDG ++ DEF  LY  ++      G+ +E+                               DG I+VEEL  V+++LGL +G  ++ CKKMI +VD DGDG VN+ EF +MMK GG
Sbjct:   65 ELKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCVDIDEFESLYSSIVDEHHNDGETEEE------------------DMKDAFNVFDQDGDGFITVEELKSVMASLGLKQGKTLDGCKKMIMQVDADGDGRVNYKEFLQMMKGGG 210          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML6_ARATH (Calmodulin-like protein 6 OS=Arabidopsis thaliana GN=CML6 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27
Identity = 68/158 (43.04%), Postives = 91/158 (57.59%), Query Frame = -3
Query:  255 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 728
            EL RVF  FDKDGDG IT  EL ES +NL +++ + E  +++ K+D NGDG ++ +EF  LY+ +M  D  E                                DG I+V+EL  VLS+LGL +G  +E C+KMI +VDVDGDG VN+ EFR+MMK G
Sbjct:    5 ELNRVFQMFDKDGDGKITTKELNESFKNLGIIIPEDELTQIIQKIDVNGDGCVDIEEFGELYKTIMVEDEDE---------------VGEEDMKEAFNVFDRNGDGFITVDELKAVLSSLGLKQGKTLEECRKMIMQVDVDGDGRVNYMEFRQMMKKG 147          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML28_ORYSJ (Probable calcium-binding protein CML28 OS=Oryza sativa subsp. japonica GN=CML28 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.526e-26
Identity = 64/162 (39.51%), Postives = 91/162 (56.17%), Query Frame = -3
Query:  252 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGD---RQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 728
            EL++VF  FDK+GDG ITK EL ES +N  + + D E +  + K+DANGDG ++ +EF +LY  ++G D   R  +                               DG I+V+EL  VLS+LGL  G   ++C++MI  VD DGDG V+F EF++MM+ GG
Sbjct:    5 ELRKVFKMFDKNGDGRITKKELGESFKNFGIFIPDDELDATMDKIDANGDGCVDVEEFGLLYRSILGDDAAGRAPRTAAAAIGGEGGAPDDEDEGMREAFNVFDQNGDGFITVDELRSVLSSLGLKHGRTADDCRRMISMVDADGDGRVDFKEFKQMMRGGG 166          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML4_ARATH (Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.650e-25
Identity = 66/158 (41.77%), Postives = 93/158 (58.86%), Query Frame = -3
Query:  255 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 728
            +LKRVF  FDK+GDG ITK EL +SL NL + + D +  +M+ K+DANGDG ++ +EF  LY G +  +++E                                DG I+VEEL  V+++LGL +G  +E CK+MI +VD DGDG VN+ EF +MMK+G
Sbjct:   51 DLKRVFQMFDKNGDGRITKEELNDSLENLGIFMPDKDLIQMIQKMDANGDGCVDINEFESLY-GSIVEEKEE------------------GDMRDAFNVFDQDGDGFITVEELNSVMTSLGLKQGKTLECCKEMIMQVDEDGDGRVNYKEFLQMMKSG 189          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML17_ORYSJ (Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica GN=CML17 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.650e-25
Identity = 65/161 (40.37%), Postives = 90/161 (55.90%), Query Frame = -3
Query:  255 KKGELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAG 737
            ++ EL+RVF  FD+DGDG IT+ EL ESL  L + V   E    +A++DANGDG ++ DEF  LYE +M  D                                   DG I+V+ELG VL++LG+ +G   E+C +MI +VD DGDG V+F EF++MM+ G
Sbjct:    5 QQAELRRVFELFDRDGDGRITREELTESLERLGMPVHREELAATIARIDANGDGCVDMDEFTQLYETVMRVD-------GGGGGGGGACDVDEASMREAFDVFDRNGDGFITVDELGAVLASLGIKQGRTAEDCGRMIGQVDRDGDGRVDFLEFKQMMRGG 158          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML22_ORYSJ (Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica GN=CML22 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.310e-24
Identity = 64/159 (40.25%), Postives = 88/159 (55.35%), Query Frame = -3
Query:  252 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 728
            EL RVF  FD++GDG IT+ EL +SL  L + V   E   ++A++DANGDG ++ +EF  LY  +M G    K                               DG I+V+ELG VL++LGL +G   E C++MI +VD DGDG V+F EF +MM+ GG
Sbjct:   92 ELARVFELFDRNGDGRITREELEDSLGKLGIPVPADELAAVIARIDANGDGCVDVEEFGELYRSIMAGGDDSK-----DGRAKEEEEEEDGDMREAFRVFDANGDGYITVDELGAVLASLGLKQGRTAEECRRMIGQVDRDGDGRVDFHEFLQMMRGGG 245          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML30_ORYSJ (Probable calcium-binding protein CML30 OS=Oryza sativa subsp. japonica GN=CML30 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 68/169 (40.24%), Postives = 87/169 (51.48%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTD-MEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEK----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGN---KIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            +L  VF+TFD DGDGFIT  EL ESL+ L + V+   EA  +VA+VDAN DGLI+  EF  LY+ +    +  +                                         DGLIS EELG VL +LGL +      +  C+ MIR VD DGDGMV+F+EF+RMM
Sbjct:   63 DLGIVFSTFDHDGDGFITAAELEESLKRLGIAVSSAAEAAALVARVDANSDGLIDIHEFRELYDSIPKRRKSHQQHPLPSTAAADEEAAAADEEYEAEEEERDLREAFDVFDGNKDGLISAEELGTVLESLGLRQHGGRPAVAECRDMIRLVDSDGDGMVSFEEFKRMM 231          
The following BLAST results are available for this feature:
BLAST of CF838400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CML7_ARATH1.383e-3044.65Calmodulin-like protein 7 OS=Arabidopsis thaliana ... [more]
CML2_ARATH2.609e-2943.48Calmodulin-like protein 2 OS=Arabidopsis thaliana ... [more]
CML3_ARATH9.914e-2942.24Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]
CML5_ARATH1.870e-2742.07Calmodulin-like protein 5 OS=Arabidopsis thaliana ... [more]
CML6_ARATH3.189e-2743.04Calmodulin-like protein 6 OS=Arabidopsis thaliana ... [more]
CML28_ORYSJ3.526e-2639.51Probable calcium-binding protein CML28 OS=Oryza sa... [more]
CML4_ARATH6.650e-2541.77Calmodulin-like protein 4 OS=Arabidopsis thaliana ... [more]
CML17_ORYSJ6.650e-2540.37Probable calcium-binding protein CML17 OS=Oryza sa... [more]
CML22_ORYSJ4.310e-2440.25Probable calcium-binding protein CML22 OS=Oryza sa... [more]
CML30_ORYSJ4.460e-2140.24Probable calcium-binding protein CML30 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838400 ID=CF838400; Name=CF838400; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTGTAGCCATTAATTCCAGACAANCTTTATTCCAATACGAGAGGA
ATTCTTTCAAAATCAGATTTAAGGCATAATCTACAACTTAAGTTTGTGTG
TGCCATGCCATTACACGAAGCATCCGTACATTTGGTTAGTGGCGTCAAAG
GCTTCTGAAACAAGCTCTTCTAATTATTGTTGTATGTACAATCTCTGTTC
TGTACGCAGTGAACTTGGAATCACAGAGACTCAAAAGGCTGTAAGAAGCA
CTCCTCCAGCCTTCATCATCCTCCTAAACTCATCAAAATTAACCATCCCG
TCACCGTCCACGTCAACTTTCCTAATCATCTTTTTACAATTTTCAATCTT
GTTACCTTCATTTAACCCTAAGGCAGACAACACTAGCCCCAACTCCTCCA
CTGAAATCAACCCATCTTTATCTTTATCAAACACATCAAAAGCATCCTTC
AAATCATCGCCTTCATCGGCACCACCACCACCACCACCTTCCCCATCTCC
GGCGCCGCCCTTTTCCTGGCGATCTCCACCCATCATGCCCTCGTACAACA
TGCAAAACTCATCAAACTCAATCAGCCCATCTCCATTAGCATCAACTTTT
GCAACCATTTCTTCGGCTTCCATGTCGGTAACCATCAGCCTTAGGTTCCG
TAGCGACTCTACAAGCTCCGTCTTTGTTATGAATCCGTCCCCGTCTTTGT
CAAAAGTCGCAAATACCCTCTTGAGCTCACCTTTCTTGTATGCAC
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