CF838402

Overview
NameCF838402
Unique NameCF838402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3536 contig Csv1_Contig3536:7..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838402 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.870e-65
Identity = 135/248 (54.44%), Postives = 165/248 (66.53%), Query Frame = 3
Query:   24 NSPNTPSMASAFILLLGMLIATLDTTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGVPNDFDLLRRIASNQAEANTWXXXXXXXXXXXXXXXYIAVGNEAKPGDDFAQYLVPAMRNIQNAINGANLGSQIKVSTAIAFGALDKSSPPSAGSFNQDYR-PILDPLITFLNENNSPLLVNLYPYFAIVGD-RQISLDYALFRSQQPVVSDPPLSYQNLFDAQLD 761
            +S    S  +A   L  +LI    TT AQ GVCYG LG+NLP+  +V+ALYNQ NIRRMR+Y P+ E LEALRGSNIE++L +PN  D LR +AS+Q  AN W               Y++VGNE KP   FAQ+LVPA+ NIQ AI+ A LG+Q+KVSTAI  GAL +S PPS GSF  DYR   LD +I FL  NN+PL+VN+Y YFA   + + ISLDYALFRS   VV D  L Y+NLFDA +D
Sbjct:    5 HSSGKSSSMTAIAFLFILLITYTGTTDAQSGVCYGRLGNNLPTPQEVVALYNQANIRRMRIYGPSPEVLEALRGSNIELLLDIPN--DNLRNLASSQDNANKWVQDNIKNYANNVRFRYVSVGNEVKPEHSFAQFLVPALENIQRAISNAGLGNQVKVSTAIDTGALAESFPPSKGSFKSDYRGAYLDGVIRFLVNNNAPLMVNVYSYFAYTANPKDISLDYALFRSPSVVVQDGSLGYRNLFDASVD 250          
BLAST of CF838402 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.923e-63
Identity = 136/241 (56.43%), Postives = 162/241 (67.22%), Query Frame = 3
Query:   54 AFILLLGMLI----ATLDTTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGVPNDFDLLRRIASNQAEANTWXXXXXXXXXXXXXXXYIAVGNEAKPGDDFAQYLVPAMRNIQNAINGANLGSQIKVSTAIAFGALDKSSPPSAGSFNQDYRPILDPLITFLNENNSPLLVNLYPYFAIVGDRQ-ISLDYALFRSQQPVVSDPPLSYQNLFDAQLD 761
            + +LLLG L+    AT   T A IGVC GM+GD+LP + +V+ALY  NNI RMRLYDPN  ALEALRGSNI+++LGVPN+   L+ IA +QA AN W               YIAVGNE KP D FAQ+LVPAMRNIQ AI+ A L  +IKVSTAI  G L ++ PPS GSF  +Y  +L P+I FL  + SPLLVNLYPYFA  G+ Q I LDYALF +   VV D    Y+NLFDA LD
Sbjct:   17 SIVLLLGQLVVGSLATKQHTGAPIGVCNGMVGDDLPPQAEVVALYKTNNIPRMRLYDPNPAALEALRGSNIKLLLGVPNEN--LQYIALSQANANAWVQNNVRNYANVKFK-YIAVGNEVKPSDSFAQFLVPAMRNIQEAISLAGLAKKIKVSTAIDTGVLGETFPPSIGSFKSEYNALLYPIIRFLVSHQSPLLVNLYPYFAYSGNTQDIRLDYALFTAPSVVVQDGNFGYRNLFDAMLD 254          
BLAST of CF838402 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.701e-61
Identity = 131/238 (55.04%), Postives = 163/238 (68.49%), Query Frame = 3
Query:   60 ILLLGML-IATLDTTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGVPNDFDLLRRIASNQAEANTWXXXXXXXXXXXXXXXYIAVGNEAKPGDDFAQY---LVPAMRNIQNAINGANLGSQIKVSTAIAFGALDKSSPPSAGSFNQDYRPILDPLITFLNENNSPLLVNLYPYFAIVGDRQISLDYALFRSQQPVVSDPPLSYQNLFDAQLD 761
            +LLL +L +ATLD T AQ GVCYG  G+ LPS  DV++L N+NNIRRMR+YDP++  LEALRGSNIE+MLGVPN    L  +A++QA A+TW               YIAVGNE  P ++ ++Y   L+ AMRNIQ AI+GA LG+QIKVSTAI  G    +SPPS G F  D R  ++P+I FL  N +PLLVNLYPYFAI  +  I L+YALF S + VV+D    Y+NLFDA LD
Sbjct:    8 LLLLSVLTLATLDFTGAQAGVCYGRQGNGLPSPADVVSLCNRNNIRRMRIYDPDQPTLEALRGSNIELMLGVPNPD--LENVAASQANADTWVQNNVRNYGNVKFR-YIAVGNEVSPLNENSKYVPVLLNAMRNIQTAISGAGLGNQIKVSTAIETGLTTDTSPPSNGRFKDDVRQFIEPIINFLVTNRAPLLVNLYPYFAIANNADIKLEYALFTSSEVVVNDNGRGYRNLFDAILD 242          
BLAST of CF838402 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.751e-60
Identity = 126/245 (51.43%), Postives = 159/245 (64.90%), Query Frame = 3
Query:   42 SMASAFILLLGMLIATLDTTSAQ-IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGVPNDFDLLRRIASNQAEANTWXXXXXXXXXXXXXXXYIAVGNEAKP---GDDFAQYLVPAMRNIQNAINGANLGSQIKVSTAIAFGALDKSSPPSAGSFNQDYRPILDPLITFLNENNSPLLVNLYPYFAIVGD-RQISLDYALFRSQQPVVSDPPLSYQNLFDAQLD 761
            ++  A I+LLG+L+++ +   AQ +GVCYGMLG+NLP    V+ LY   NIRRMRLYDPN+ AL+ALRGSNIEVMLGVPN    L+ IA+N + AN W               YIAVGNE  P        +YL+PAMRNI+NAI+ A L + IKVS+++    +  S PPS GSF  D R  +DP+I F+   NSPLLVN+YPYF+  G+ R ISL YALF +   VV D  L Y+NLFDA  D
Sbjct:    9 ALQMAAIILLGLLVSSTEIVGAQSVGVCYGMLGNNLPPASQVVQLYKSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNSD--LQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPSQGSFRNDVRSFIDPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALFTAPNVVVQDGSLGYRNLFDAMSD 251          
BLAST of CF838402 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 3.091e-57
Identity = 124/236 (52.54%), Postives = 158/236 (66.95%), Query Frame = 3
Query:   60 ILLLGMLIATL-DTTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGVPNDFDLLRRIASNQAEANTWXXXXXXXXXXXXXXXYIAVGNEAKPGDDFAQYLVPAMRNIQNAINGANLGSQIKVSTAIAFGALDKSSPPSAGSFNQDYRPILDPLITFLNENNSPLLVNLYPYFAIVGD-RQISLDYALFRSQQPVVSDPPLSYQNLFDAQLD 761
            ++LL ++IA+  + T+ QIGVCYGMLGD LPS  DV+ALY Q NI+RMRLY P+  AL ALRGS+IE++L VP+    L R+AS+Q EA+ W               YI VGNE KP      +L+ AM+NI+NA++GA  G ++KVSTAIA      +SPPS G F  +Y+  L+P+I FL    SPLLVNLYPYF+ +GD   I LDYALF +Q  V +DP  SYQNLFDA LD
Sbjct:   14 MILLSLVIASFFNHTAGQIGVCYGMLGDTLPSPSDVVALYKQQNIQRMRLYGPDPGALAALRGSDIELILDVPSSD--LERLASSQTEADKWVQENVQSYRDGVRFRYINVGNEVKP--SVGGFLLQAMQNIENAVSGA--GLEVKVSTAIATDTTTDTSPPSQGRFRDEYKSFLEPVIGFLASKQSPLLVNLYPYFSYMGDTANIHLDYALFTAQSTVDNDPGYSYQNLFDANLD 243          
BLAST of CF838402 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.299e-55
Identity = 123/244 (50.41%), Postives = 151/244 (61.89%), Query Frame = 3
Query:   42 SMASAFILLLGMLIATLDTTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGVPNDFDLLRRIASNQAEANTWXXXXXXXXXXXXXXXYIAVGNEAKP---GDDFAQYLVPAMRNIQNAINGANLGSQIKVSTAIAFGALDKSSPPSAGSFNQDYRPILDPLITFLNENNSPLLVNLYPYFAIVGD-RQISLDYALFRSQQPVVSDPPLSYQNLFDAQLD 761
            S+ S F+L L   I  + TT AQIG+CYGM+G+NLP   +VIALY  NNI+RMRLYDPN+ AL ALR S IE++LG+PN    L+ +A+NQ  A  W               YIAVGNE  P       AQY++PA +N+  AI    L  QIKV+TAI    +  S PPS GSF  D R  LDP I +L    +PLLVN+YPYF+ +G+ R ISL YALF S   +V D P  YQNLFDA LD
Sbjct:   12 SLVSLFLLEL-FTINLIPTTDAQIGICYGMMGNNLPPANEVIALYKANNIKRMRLYDPNQPALNALRDSGIELILGIPNSD--LQTLATNQDSARQWVQRNVLNFYPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNVYQAIRAQGLHDQIKVTTAIDMTLIGNSFPPSKGSFRSDVRSYLDPFIGYLVYAGAPLLVNVYPYFSHIGNPRDISLPYALFTSPGVMVQDGPNGYQNLFDAMLD 252          
BLAST of CF838402 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.696e-55
Identity = 122/241 (50.62%), Postives = 151/241 (62.66%), Query Frame = 3
Query:   54 AFILLLGMLIAT-LDTTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGVPNDFDLLRRIASNQAEANTWXXXXXXXXXXXXXXXYIAVGNEAKP---GDDFAQYLVPAMRNIQNAINGANLGSQIKVSTAIAFGALDKSSPPSAGSFNQDYRPILDPLITFLNENNSPLLVNLYPYFAIVGD-RQISLDYALFRSQQPVVSDPPLSYQNLFDAQLD 761
            A I+LLG+L+AT +  T AQIGVCYGM+G+NLPS  +VI LY   NIRR+RLYDPN  AL ALRGSNIEV+LG+PN    ++ I+S    A  W               YIAVGNE  P     + A + VPA+ NI  AI  A LG+ IKVST++    +  S PPS GSF  D R   DP++ FL +  +PLLVN+YPYF+  G+  QISL YALF +   VV D    Y+NLFDA LD
Sbjct:    7 AIIVLLGLLVATNIHITEAQIGVCYGMMGNNLPSHSEVIQLYKSRNIRRLRLYDPNHGALNALRGSNIEVILGLPNVD--VKHISSGMEHARWWVQKNVRDFWPHVKIKYIAVGNEISPVTGTSNLAPFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSRQYRNLFDAMLD 245          
BLAST of CF838402 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.893e-55
Identity = 127/256 (49.61%), Postives = 157/256 (61.33%), Query Frame = 3
Query:   27 SPNTPSMASAF------ILLLGMLIATLDTTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGVPNDFDLLRRIASNQAEANTWXXXXXXXXXXXXXXXYIAVGNEAKPGDD----FAQYLVPAMRNIQNAINGANLGSQIKVSTAIAFGALDKSSPPSAGSFNQDYRPILDPLITFLNENNSPLLVNLYPYFAIV-GDRQISLDYALFRSQQPVVSDPPLSYQNLFDAQLD 761
            S +T   +S+F      +LLL    A++  T AQ+GVCYGM G+NLP   +VIALY ++NI RMR+YDPN+  LEALRGSNIE++LGVPN  DL  +  +N + A +W               YIAVGNE  P +      AQ+++PAMRNI +AI  A L  QIKVSTAI    +  S PPSAG+F  D R  LDP+I FL+   SPLL N+YPYF      R ISL YALF S   VV D    Y+NLFDA LD
Sbjct:    4 SSSTSGTSSSFPSRTTVMLLLFFFAASVGITDAQVGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNRAVLEALRGSNIELILGVPNS-DL--QSLTNPSNAKSWVQKNVRGFWSSVLFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLDPIIGFLSSIRSPLLANIYPYFTYAYNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLD 256          
BLAST of CF838402 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.449e-54
Identity = 119/241 (49.38%), Postives = 149/241 (61.83%), Query Frame = 3
Query:   54 AFILLLGMLIAT-LDTTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGVPNDFDLLRRIASNQAEANTWXXXXXXXXXXXXXXXYIAVGNEAKP---GDDFAQYLVPAMRNIQNAINGANLGSQIKVSTAIAFGALDKSSPPSAGSFNQDYRPILDPLITFLNENNSPLLVNLYPYFAIVGD-RQISLDYALFRSQQPVVSDPPLSYQNLFDAQLD 761
            A I+LLG+L+AT +  T AQ+GVCYGM+G+NLPS  +VI LY   NI R+RLYDPN+ AL ALRGSNIEV+LG+PN    ++ IAS    A  W               YIAVGNE  P         + VPA+ NI  A+  A LG+ IKVST++    +  S PPS GSF  D R   DP++ FL +  +PLLVN+YPYF+  G+  QISL YALF +   VV D    Y+NLFDA LD
Sbjct:    7 AVIVLLGLLVATNIHITEAQLGVCYGMMGNNLPSHSEVIQLYKSRNIGRLRLYDPNQGALNALRGSNIEVILGLPNVD--VKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSRQYRNLFDAMLD 245          
BLAST of CF838402 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.126e-54
Identity = 121/248 (48.79%), Postives = 153/248 (61.69%), Query Frame = 3
Query:   33 NTPSMASAFILLLGMLIATLDTTSAQ-IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGVPNDFDLLRRIASNQAEANTWXXXXXXXXXXXXXXXYIAVGNEAKP--GDDF-AQYLVPAMRNIQNAINGANLGSQIKVSTAIAFGALDKSSPPSAGSFNQDYRPILDPLITFLNENNSPLLVNLYPYFAIVGD-RQISLDYALFRSQQPVVSDPPLSYQNLFDAQLD 761
            NTP MA+  +L L ++ +T++   AQ IGVCYGMLG+NLP+  +VI LY   NI R+RLYDPN  AL+AL+GSNIEVMLG+PN    ++ IAS    A  W               YIAVGNE  P  G  +   +L PAM NI  AI  A LG+ IKVST++    +  S PPS GSF  D R   DP++ FL +  +PLLVN+YPYF+  G+  QISL Y+LF +   VV D    Y+NLFDA LD
Sbjct:    8 NTPQMAAITLLGLLLVASTIEIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSD--VKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRNDARWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLFTAPNVVVQDGSRQYRNLFDAMLD 253          
The following BLAST results are available for this feature:
BLAST of CF838402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
E13A_SOYBN6.870e-6554.44Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
E13B_PRUPE4.923e-6356.43Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13H_TOBAC2.701e-6155.04Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
GUB_NICPL1.751e-6051.43Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E13A_ARATH3.091e-5752.54Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13B_PEA1.299e-5550.41Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]
E13B_SOLLC1.696e-5550.62Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]
E13B_HEVBR2.893e-5549.61Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E132_SOLTU2.449e-5449.38Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E13F_TOBAC7.126e-5448.79Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838402 ID=CF838402; Name=CF838402; organism=Citrus sinensis; type=EST; length=762bp
CTCCACGCATGGCCTTTTAAGTTAACTCTCCCAATACCCCTTCAATGGCT
TCCGCTTTCATCTTACTTCTGGGGATGCTAATCGCTACCCTGGACACAAC
AAGTGCTCAAATAGGTGTTTGTTATGGAATGCTTGGTGACAACTTGCCAT
CAAAACCAGATGTCATAGCTCTCTATAACCAAAATAACATCAGAAGAATG
AGACTCTATGATCCAAACAAAGAAGCTCTCGAAGCTCTCCGTGGCTCCAA
CATTGAAGTCATGCTGGGCGTTCCCAACGATTTTGACCTCCTCCGAAGAA
TTGCTTCCAATCAAGCCGAAGCAAATACCTGGGTCCAAGACAACGTCCAA
AATTTTGTTAACAATGTCAAGTTCAAATATATTGCTGTAGGAAATGAAGC
AAAACCAGGAGACGACTTTGCGCAGTATCTTGTACCCGCCATGAGAAACA
TACAAAACGCCATTAACGGAGCTAACCTTGGAAGCCAAATCAAAGTTTCC
ACAGCCATTGCATTCGGAGCTCTTGATAAATCCTCTCCGCCGTCAGCTGG
CTCCTTTAATCAAGATTACAGACCAATTCTCGATCCCCTCATTACCTTCC
TTAACGAAAACAATTCCCCGTTGCTTGTTAACTTGTACCCTTACTTTGCC
ATCGTTGGTGACCGTCAAATATCTCTTGATTATGCACTATTTAGGTCCCA
ACAACCGGTTGTTTCGGACCCTCCGTTGAGTTACCAGAATCTTTTTGATG
CCCAGTTGGATG
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