CF838435

Overview
NameCF838435
Unique NameCF838435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1297 contig Csv1_Contig1297:1..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF838435 vs. ExPASy Swiss-Prot
Match: SPG21_BOVIN (Maspardin OS=Bos taurus GN=SPG21 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.329e-40
Identity = 92/210 (43.81%), Postives = 130/210 (61.90%), Query Frame = 2 
Query:  179 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASV 787
            G      D+  F+S VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N+F DT  F     W     W  PSF+LK+ VL     GP +P +AD++DF+V ++E+L + +LASRLTL    + V
Sbjct:    2 GEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRNIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTASSFWLMPSFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYV 209
[Close]
BLAST of CF838435 vs. ExPASy Swiss-Prot
Match: SPG21_RAT (Maspardin OS=Rattus norvegicus GN=Spg21 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.165e-39
Identity = 91/210 (43.33%), Postives = 129/210 (61.43%), Query Frame = 2 
Query:  179 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASV 787
            G      D+  F+S VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N F DT  F     W     W  P+F+LK+ VL     GP +P +AD++DF+V ++E+L + +LASRLTL    + V
Sbjct:    2 GEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFQQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNAFSDTSIF--NQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYV 209
[Close]
BLAST of CF838435 vs. ExPASy Swiss-Prot
Match: SPG21_MOUSE (Maspardin OS=Mus musculus GN=Spg21 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.165e-39
Identity = 91/210 (43.33%), Postives = 129/210 (61.43%), Query Frame = 2 
Query:  179 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASV 787
            G      D+  F+S VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N F DT  F     W     W  P+F+LK+ VL     GP +P +AD++DF+V ++E+L + +LASRLTL    + V
Sbjct:    2 GEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFQQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNAFSDTSIF--NQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYV 209
[Close]
BLAST of CF838435 vs. ExPASy Swiss-Prot
Match: SPG21_PONAB (Maspardin OS=Pongo abelii GN=SPG21 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.398e-39
Identity = 90/210 (42.86%), Postives = 129/210 (61.43%), Query Frame = 2 
Query:  179 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASV 787
            G      D+  F+  VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N+F DT  F     W     W  P+F+LK+ VL     GP +P +AD++DF+V ++E+L + +LASRLTL    + V
Sbjct:    2 GEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYV 209
[Close]
BLAST of CF838435 vs. ExPASy Swiss-Prot
Match: SPG21_HUMAN (Maspardin OS=Homo sapiens GN=SPG21 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.398e-39
Identity = 90/210 (42.86%), Postives = 129/210 (61.43%), Query Frame = 2 
Query:  179 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASV 787
            G      D+  F+  VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N+F DT  F     W     W  P+F+LK+ VL     GP +P +AD++DF+V ++E+L + +LASRLTL    + V
Sbjct:    2 GEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYV 209
[Close]
BLAST of CF838435 vs. ExPASy Swiss-Prot
Match: SPG21_XENLA (Maspardin OS=Xenopus laevis GN=spg21 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.051e-39
Identity = 90/210 (42.86%), Postives = 131/210 (62.38%), Query Frame = 2 
Query:  179 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASV 787
            G      D+  F+S VPL +I +    +K W  YD GP+ V  P+I LP  +GTA+V++ QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV+SL+L N+F DT  F     W     W  P+F+LK+ +L     GP +P +AD++DF+V ++E+L++ +LASRLTL    A V
Sbjct:    2 GAIKISPDYNWFRSTVPLKRIIVDDDDSKVWSLYDAGPRSVRCPIIYLPPVSGTADVFFHQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDDLHLDKVHLFGASLGGFLAQKFAEYTHKSPRVQSLILCNSFSDTSIF--NQTWTANSFWLMPAFMLKKILLGNFSSGPVDPVMADAIDFMVDRLESLNQSELASRLTLNCQNAYV 209
[Close]
BLAST of CF838435 vs. ExPASy Swiss-Prot
Match: SPG21_MACFA (Maspardin OS=Macaca fascicularis GN=SPG21 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.051e-39
Identity = 89/203 (43.84%), Postives = 128/203 (63.05%), Query Frame = 2 
Query:  200 DFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASV 787
            D+  F+  VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N+F DT  F     W     W  P+F+LK+ VL     GP +P +AD++DF+V ++E+L + +LASRLTL    + V
Sbjct:    9 DYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYV 209
[Close]
BLAST of CF838435 vs. ExPASy Swiss-Prot
Match: SPG21_DANRE (Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.570e-38
Identity = 91/203 (44.83%), Postives = 129/203 (63.55%), Query Frame = 2 
Query:  200 DFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASV 787
            D+  F+S VPL +I +    +K W  YD GPK +  P+I LP  +GTAEV+++Q++ALS  GYRVIS+  P  W+  E+   F K LD + +  +HL+G SLGGFLAQ FA+  ++  RV SLVL N+F DT  F     W     W  PSF+LK+ VL     GP +P +AD++DF+V ++E+L++ +LASRLTL    + V
Sbjct:    9 DYNWFRSTVPLKRIIVDDDDSKVWSLYDAGPKSIRCPIIFLPPVSGTAEVFFQQVLALSGWGYRVISLQYPVYWDLLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEVTYKSPRVHSLVLCNSFSDTSIF--NQTWTANSFWLMPSFMLKKIVLGNFAKGPVDPKMADAIDFMVDRLESLNQSELASRLTLNCQNSYV 209
The following BLAST results are available for this feature:
BLAST of CF838435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SPG21_BOVIN8.329e-4043.81Maspardin OS=Bos taurus GN=SPG21 PE=2 SV=1[more]
SPG21_RAT3.165e-3943.33Maspardin OS=Rattus norvegicus GN=Spg21 PE=2 SV=1[more]
SPG21_MOUSE3.165e-3943.33Maspardin OS=Mus musculus GN=Spg21 PE=1 SV=1[more]
SPG21_PONAB5.398e-3942.86Maspardin OS=Pongo abelii GN=SPG21 PE=2 SV=1[more]
SPG21_HUMAN5.398e-3942.86Maspardin OS=Homo sapiens GN=SPG21 PE=1 SV=1[more]
SPG21_XENLA7.051e-3942.86Maspardin OS=Xenopus laevis GN=spg21 PE=2 SV=1[more]
SPG21_MACFA7.051e-3943.84Maspardin OS=Macaca fascicularis GN=SPG21 PE=2 SV=... [more]
SPG21_DANRE4.570e-3844.83Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06J06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838435 ID=CF838435; Name=CF838435; organism=Citrus sinensis; type=EST; length=803bp
ACGCTTTAATCAAGTGAGAGGAAGAGGGGAAAAAAAAATAAAGCGTGTTA
ATTTTTCTTTCAGTGATTGAATGATTGATCAATCTTTTATAAGATTGGAA
TAATCGATTTTTATTTTTTTTTGAAAAGGGAATAATCGAATTTGAATGCA
TGTGTAGGCTCAAAAGTCGACAATGAAAGGCGTCTTCTCGGCGCCCGGAG
ATTTTGTCCACTTCAAGTCTCAGGTCCCTCTTTACAAGATCCCTATTGGC
ACAAAGCAGTGGCGATATTATGATTTTGGCCCAAAAGTAGTTCCTCCACT
TATTTGTCTTCCTGGAACGGCAGGGACAGCAGAAGTCTACTACAAGCAGA
TCATGGCTTTGTCCATGAAGGGTTACCGGGTGATTTCTGTTGATATTCCA
CGTGTATGGAATCATCATGAGTGGATTCAAGCATTTGAAAAATTCCTTGA
TGCCATTGATGTTCATCATATACACCTTTACGGCACATCACTTGGAGGCT
TCCTAGCACAACTTTTTGCTCAGCATCGCCCAAGACGAGTTAGATCATTA
GTCTTATCAAATACATTTTTGGATACGCATAGTTTCGCAGCTGCAATGCC
ATGGGCTCCCATTGTTAGTTGGACACCTTCTTTTTTGCTTAAACGATACG
TCTTAACAGGAATTCATGATGGCCCTCATGAACCATTTATTGCAGATTCT
GTGGACTTTGTTGTTTGCCAGGTAGAAACACTATCAAGAGAAGACTTGGC
ATCCAGGTTGACTTTGACAGCTGATGCTGCTTCGGTTGGAAATCTTCTGC
TTT
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