CF838436

Overview
NameCF838436
Unique NameCF838436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6253 contig Csv1_Contig6253:20..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF838436 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.519e-38
Identity = 80/132 (60.61%), Postives = 96/132 (72.73%), Query Frame = 3 
Query:  201 GSSSDTNAKVVEKRKPVFTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQL------RQTRIAECLVGDDTGTILFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKFVVKED 578
            G+++        KRKPVF KV+QLKPGT GH LTV V+++  V+P  R   P        + +RI ECL+GD+TG ILFTARNDQVDLMKPG TVILRN++IDMFKG+MR+ VDKWGRIEAT  A F VKED
Sbjct:    5 GTAAVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136
The following BLAST results are available for this feature:
BLAST of CF838436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH1.519e-3860.61Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06J07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838436 ID=CF838436; Name=CF838436; organism=Citrus sinensis; type=EST; length=789bp
CCACGACACAATCCATCAGTTTGTTATTTGTCCAGGAACACAAAAACACA
ATCCAATTCCGATCCAACGGAACTATCAGAAACTTGTTGTTCTGTTTCTT
TTAAAATTTATTTAACAAACTATTTTCTTAGATTCGAATCAAATTTCAAA
TGGCAACAAGAACAACAAAACAGCAGCAAAAAGCCCAAAAACAACAGCAA
GGCAGCAGCTCCGACACTAATGCTAAGGTTGTCGAGAAGAGAAAGCCTGT
GTTTACAAAAGTGGATCAGCTAAAACCGGGAACCAATGGTCACAATTTGA
CCGTCAATGTCTTGAAGTCCGAACCCGTTCTGCCTAAAAATCGTGCGGCT
TCCCCACAGCTCCGCCAAACCCGAATCGCTGAGTGCCTTGTCGGTGACGA
TACTGGCACCATCCTCTTCACTGCCCGCAACGATCAAGTTGACTTGATGA
AGCCGGGCACCACAGTAATCCTCCGTAACGCAAAGATTGACATGTTTAAG
GGGTCTATGAGGATAGCTGTTGACAAATGGGGCCGCATTGAGGCCACTGA
ACCTGCTAAATTTGTTGTTAAAGAAGACAACAATTTGTCCCTTGTTGAGT
ATGAATTGGTGAACGTGGTTGAAGAATGATCCAAGAAGCTCTTCCAAATG
ATCATTTCTCATCTGCTTCGTTCGTGGCATATTTATGTTGCAATTTTCCA
GTGGCTATAGCTTTGTAAACAAATCTAATTAAGGTTGGATTTTTTTTTCT
CCATTTGATTAATGTCTTTGGGTAATCTTGTGCTATCAT
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