CF838442

Overview
NameCF838442
Unique NameCF838442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5424 contig Csv1_Contig5424:93..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.841e-27
Identity = 69/162 (42.59%), Postives = 95/162 (58.64%), Query Frame = 1
Query:   10 LDMSLDDIIKSNKXXXXXXXXXXXXXXXXXPARHTFKRSVNRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGP 495
            +DMSLDDIIK N+                  AR       NR APYS+P   P   W  ++  +G           +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +V +DRSGRS GTA+V   RRADA+ A+K+Y  V LDG+PM I+++ + I P
Sbjct:    5 MDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDK-WQHDLFDSGCGG-----GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDP 156          
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 58/120 (48.33%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 489
            NR APYS+P Q P+  W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+PM I+++ + I
Sbjct:   69 NRPAPYSRPKQLPEK-WQHDLFDSGFGA-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 182          
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 68/151 (45.03%), Postives = 95/151 (62.91%), Query Frame = 1
Query:  130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGTSRSHLRMGGAI 582
            NR APYS+P Q P   W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+PM I+++ + I   A   PI +   G  I   R     GGAI
Sbjct:   75 NRPAPYSRPKQLPDK-WQHDLFDSGFGT-----GAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI--EAQRRPIQSQSRGGGITRPR-----GGAI 212          
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 489
            NR APYS+P Q P   W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+PM I+++ + I
Sbjct:   71 NRPAPYSRPKQLPDK-WQHDLFDSGFGG-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 184          
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 489
            NR APYS+P Q P   W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+PM I+++ + I
Sbjct:   72 NRPAPYSRPKQLPDK-WQHDLFDSGFGG-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185          
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 489
            NR APYS+P Q P   W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+PM I+++ + I
Sbjct:   72 NRPAPYSRPKQLPDK-WQHDLFDSGFGG-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185          
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25
Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 489
            NR  PYS+P Q P   W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+PM I+++ + I
Sbjct:   72 NRPTPYSRPKQLPDK-WQHDLFDSGFGA-----GAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185          
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 1
Query:  130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGTSRSHLRMGGAI 582
            NR  PYS+P Q P   W  ++  +G         + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V   R+ADA+ A+K+YN V LDG+ M I+++ + I   A   PI +   G  +   R     GGAI
Sbjct:   71 NRPTPYSRPKQLPDK-WQHDLFDSGFGT-----GAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQI--EAQRRPIQSQSRGGGVARPR-----GGAI 208          
The following BLAST results are available for this feature:
BLAST of CF838442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
REFP2_MOUSE2.841e-2742.59RNA and export factor-binding protein 2 OS=Mus mus... [more]
THOC4_TAEGU3.142e-2648.33THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
THOC4_XENTR4.103e-2645.03THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
THOC4_MOUSE5.359e-2648.33THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
THOC4_HUMAN5.359e-2648.33THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
THOC4_BOVIN5.359e-2648.33THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THO4A_XENLA2.659e-2547.50THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
THO4B_XENLA5.925e-2543.05THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06J14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838442 ID=CF838442; Name=CF838442; organism=Citrus sinensis; type=EST; length=695bp
ACTAGCGCCTTGGACATGTCTCTCGATGATATCATCAAATCCAACAAGAG
GTCCAGTTCTCGCTGGCGCGGCGGAGGCGGCAGAGGTTCGGGCCTAGGCC
CCGCCCGTCACACCTTCAAGCGCAGCGTCAACAGAACGGCGCCCTATTCC
AAGCCGGTTCAAGCTCCGCAAGCCACGTGGCCACAGAACATGATCTTCAA
CGGTGCTGTTGCAGCTGCTGCGGCTCGATCTTCATCGATAGAGAGTGGCA
CCAAACTTTATATTTCAAACTTGGAATACGGTGTTTCTAATGAAGACATC
AAGGAGCTTTTTTCAGAGGTTGGTGAACTTAAACGGTGTTCTGTTCATTT
TGATAGGAGTGGAAGATCAAAGGGAACTGCAGAAGTTGTCTTAACACGAC
GAGCTGATGCTATAGCAGCTGTAAAGAGATACAATAATGTCCAGCTAGAT
GGAAAACCAATGAAAATTGAGATAATTGGAACAAATATTGGACCTCCAGC
TGCTGTGCTTCCAATTACAAATGTCATGTATGGAAACGAAATTGGCACTT
CAAGAAGTCACCTAAGAATGGGAGGTGCCATTCCCATTGAAAGGCCTCGC
CATGGCCGTGGTGGCCTCGGTGGCCGTGGAGGCAGGGGAGGTGCCACGGG
GGGTCGTGGAAGAGGTAGAGGTCAAGGTGCAAAGCCAAACCTTTC
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