CF838442
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.841e-27 Identity = 69/162 (42.59%), Postives = 95/162 (58.64%), Query Frame = 1 Query: 10 LDMSLDDIIKSNKXXXXXXXXXXXXXXXXXPARHTFKRSVNRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGP 495 +DMSLDDIIK N+ AR NR APYS+P P W ++ +G +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +V +DRSGRS GTA+V RRADA+ A+K+Y V LDG+PM I+++ + I P Sbjct: 5 MDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDK-WQHDLFDSGCGG-----GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDP 156
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26 Identity = 58/120 (48.33%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 489 NR APYS+P Q P+ W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I Sbjct: 69 NRPAPYSRPKQLPEK-WQHDLFDSGFGA-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 182
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26 Identity = 68/151 (45.03%), Postives = 95/151 (62.91%), Query Frame = 1 Query: 130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGTSRSHLRMGGAI 582 NR APYS+P Q P W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I A PI + G I R GGAI Sbjct: 75 NRPAPYSRPKQLPDK-WQHDLFDSGFGT-----GAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI--EAQRRPIQSQSRGGGITRPR-----GGAI 212
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3) HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26 Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 489 NR APYS+P Q P W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I Sbjct: 71 NRPAPYSRPKQLPDK-WQHDLFDSGFGG-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 184
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3) HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26 Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 489 NR APYS+P Q P W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I Sbjct: 72 NRPAPYSRPKQLPDK-WQHDLFDSGFGG-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26 Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 489 NR APYS+P Q P W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I Sbjct: 72 NRPAPYSRPKQLPDK-WQHDLFDSGFGG-----GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25 Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 489 NR PYS+P Q P W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I Sbjct: 72 NRPTPYSRPKQLPDK-WQHDLFDSGFGA-----GAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185
BLAST of CF838442 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25 Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 1 Query: 130 NRTAPYSKPVQAPQATWPQNMIFNGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGTSRSHLRMGGAI 582 NR PYS+P Q P W ++ +G + +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+YN V LDG+ M I+++ + I A PI + G + R GGAI Sbjct: 71 NRPTPYSRPKQLPDK-WQHDLFDSGFGT-----GAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQI--EAQRRPIQSQSRGGGVARPR-----GGAI 208 The following BLAST results are available for this feature:
BLAST of CF838442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF838442 ID=CF838442; Name=CF838442; organism=Citrus sinensis; type=EST; length=695bpback to top |