CF838448

Overview
NameCF838448
Unique NameCF838448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7965 contig Csv1_Contig7965:1..548. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: ISCU_MOUSE (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.537e-28
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            DEK G+IVDA FKTFGCGSAIASSS+ATEWVKGK +EE L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K
Sbjct:   81 DEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLK 157          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: ISCU_HUMAN (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.537e-28
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            DEK G+IVDA FKTFGCGSAIASSS+ATEWVKGK +EE L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K
Sbjct:   80 DEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLK 156          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: ISU1_DEBHA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Debaryomyces hansenii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.633e-26
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKHT 240
            D+++G I D  FKTFGCGSAIASSS  TE VKGK +EE + IKNT IAK LSLPPVKLHCSMLAEDAIK+AVKDY +K +
Sbjct:   82 DDETGVIKDVKFKTFGCGSAIASSSYLTELVKGKTIEEAVKIKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDYRSKRS 161          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: NIFU_RICPR (NifU-like protein OS=Rickettsia prowazekii GN=nifU PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.258e-25
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1
Query:   19 IVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            I DA FKTFGCGSAIASSS+ TEW+KGK +E+   IKNTEIAK LSLPPVKLHCS+LAEDAIKAA+ DY+ K
Sbjct:   53 ITDAKFKTFGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQK 124          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAI (NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nifU PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.146e-25
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    7 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            + G I DACFKT+GCGSAIASSS+ TEWVKGK +EE  SIKNT I + L LPPVK+HCS+LAEDAIKAA+ DY+ K
Sbjct:   49 EKGIIEDACFKTYGCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYKRK 124          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: NIFU_BUCBP (NifU-like protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nifU PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.660e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    7 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKH 237
            K+G I DACFKT+GCGSAIASSS+ TEW+KGK + E  +IKNT IA+ L LPPVK+HCS+LAEDAIKAA+ DY+ K+
Sbjct:   49 KNGIIQDACFKTYGCGSAIASSSLVTEWIKGKSLIEAENIKNTNIAEELDLPPVKIHCSILAEDAIKAAITDYKNKN 125          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: ISU2_YEAST (Iron sulfur cluster assembly protein 2, mitochondrial OS=Saccharomyces cerevisiae GN=ISU2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.244e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            ++KSG I +  FKTFGCGSAIASSS  TE V+G  ++E + IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY+ K
Sbjct:   72 NDKSGIIENVKFKTFGCGSAIASSSYMTELVRGMSLDEAVKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKTK 149          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: ISU1_KLULA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.155e-25
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            ++++G I +  FKTFGCGSAIASSS  TE V+GK +E+   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY+AK
Sbjct:   96 NDETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYQAK 173          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAP (NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nifU PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.391e-24
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    7 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            + G I DACFKT+GCGSAIASSS+ TEW+KGK + E  +IKNT I + L LPPVK+HCS+LAEDAIKAA+ DY++K
Sbjct:   49 EQGIIEDACFKTYGCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSK 124          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: NIFU_SHIFL (NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.373e-24
Identity = 52/74 (70.27%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   13 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++K
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSK 124          
The following BLAST results are available for this feature:
BLAST of CF838448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISCU_MOUSE3.537e-2880.77Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISCU_HUMAN3.537e-2880.77Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISU1_DEBHA9.633e-2672.50Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_RICPR1.258e-2576.39NifU-like protein OS=Rickettsia prowazekii GN=nifU... [more]
NIFU_BUCAI2.146e-2571.05NifU-like protein OS=Buchnera aphidicola subsp. Ac... [more]
NIFU_BUCBP3.660e-2568.83NifU-like protein OS=Buchnera aphidicola subsp. Ba... [more]
ISU2_YEAST6.244e-2571.79Iron sulfur cluster assembly protein 2, mitochondr... [more]
ISU1_KLULA8.155e-2570.51Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_BUCAP1.391e-2467.11NifU-like protein OS=Buchnera aphidicola subsp. Sc... [more]
NIFU_SHIFL2.373e-2470.27NifU-like protein OS=Shigella flexneri GN=nifU PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838448 ID=CF838448; Name=CF838448; organism=Citrus sinensis; type=EST; length=548bp
GATGAAAAGAGTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTCGGTTG
TGGCTCTGCCATCGCTTCATCATCTGTTGCCACAGAATGGGTGAAAGGGA
AGCAGATGGAGGAAGTTTTGTCCATTAAGAACACGGAAATTGCAAAACAT
CTTTCTCTACCACCGGTTAAGCTGCATTGTAGCATGCTTGCTGAAGATGC
TATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACATACCAAATCAAGTG
CCGCCTCAGAGGCAGCTCCTGCAGAGAAGGCTGCCGATGCTTGAAGATAT
TGATGAAAACATTTGAAAAATGATGTTAATGTGCTACTTGTGGAAGGTGT
ATCAGGGACACTGCAAATCCTAATATTGATGGTACATGGCAGGTGGTGCA
AGGGTTAATGGTTATTAATTAGAACTGCCATTTTGTACATTATGAATCTG
AATTGTGAGTGTGTAACTGAACCACTGAGAGTGTGATCCTCTGCATGGTT
CTAAGTTTGTTTTAATTATGTTGTTCAAATTTAAAAAAAAAAAAAAAA
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