CF838462

Overview
NameCF838462
Unique NameCF838462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3649 contig Csv1_Contig3649:385..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF838462 vs. ExPASy Swiss-Prot
Match: APX4_SOLLC (Putative L-ascorbate peroxidase, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 7.569e-53
Identity = 99/125 (79.20%), Postives = 112/125 (89.60%), Query Frame = 2 
Query:    2 SNGHCCLFEKQFGRTDAPEPDPEGRVPQWEKATVQEMKDKFSAIGFGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIE 376
            SNG    F++ FGR+DA EPDPEGRVPQW+KA+VQEMKDKF A+G GPRQLAVMS+FLGPDQAATEALLA+D +V PW+QKYQRSRETVS+TDYEVDLITT TKLSSLGQ INYEAYTYP +KI+
Sbjct:  215 SNGQWGQFDRIFGRSDAQEPDPEGRVPQWDKASVQEMKDKFKAVGLGPRQLAVMSSFLGPDQAATEALLASDPEVLPWIQKYQRSRETVSRTDYEVDLITTVTKLSSLGQVINYEAYTYPPRKID 339
[Close]
BLAST of CF838462 vs. ExPASy Swiss-Prot
Match: APX4_ARATH (Probable L-ascorbate peroxidase 4, chloroplastic OS=Arabidopsis thaliana GN=APX4 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 2.202e-52
Identity = 100/124 (80.65%), Postives = 108/124 (87.10%), Query Frame = 2 
Query:    2 SNGHCCLFEKQFGRTDAPEPDPEGRVPQWEKATVQEMKDKFSAIGFGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKI 373
            S G   LF++ FGR+DA E DPEGRVPQW KATVQEMKDKF A+G GPRQLAVMSAFLGPDQAATE LLATD  V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS LGQQIN+EAYTYP ++I
Sbjct:  219 SAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGLGPRQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTYPVERI 342
The following BLAST results are available for this feature:
BLAST of CF838462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APX4_SOLLC7.569e-5379.20Putative L-ascorbate peroxidase, chloroplastic OS=... [more]
APX4_ARATH2.202e-5280.65Probable L-ascorbate peroxidase 4, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06K12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838462 ID=CF838462; Name=CF838462; organism=Citrus sinensis; type=EST; length=562bp
CTCAAATGGTCACTGTTGCCTGTTTGAAAAGCAATTTGGAAGGACAGATG
CTCCCGAGCCAGATCCAGAGGGAAGGGTTCCCCAGTGGGAGAAAGCTACT
GTCCAGGAAATGAAAGATAAATTCTCAGCAATTGGCTTTGGTCCCCGCCA
GCTAGCTGTTATGTCTGCGTTCTTGGGTCCTGATCAGGCAGCAACAGAAG
CCTTATTGGCCACCGATAAAGATGTTTCTCCTTGGGTTCAGAAATACCAA
CGTAGCAGAGAAACAGTGTCTCAGACTGATTATGAGGTCGATCTGATAAC
TACATTCACGAAATTAAGTAGCCTGGGCCAACAAATCAATTACGAGGCTT
ACACATATCCTGCTCAAAAGATTGAATTGGGCAAACTCAAATTGTAGACA
GGAAATGGACTGTGTTCCGAGAGCGGAAGTGCCAATGATTCCGCCAATAA
CTTTTTTGTAAAGCAGAGCTATTCCTCTACAATTTGGAGATTTATGTAGG
GAATTGATGCCGCAGGTTCTACATATCAATTTAAGAGTGCCTAAATAAAA
AAAAAAAAAAAA
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