CF838464
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_PIG (DNA-directed RNA polymerase II subunit RPB9 OS=Sus scrofa GN=POLR2I PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.931e-38 Identity = 67/112 (59.82%), Postives = 90/112 (80.36%), Query Frame = 3 Query: 222 MKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 554 ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+ C KC H EAVFFQ+ ++R E+ M L++VC P+CGHRW E Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_MOUSE (DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus GN=Polr2i PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.931e-38 Identity = 67/112 (59.82%), Postives = 90/112 (80.36%), Query Frame = 3 Query: 222 MKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 554 ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+ C KC H EAVFFQ+ ++R E+ M L++VC P+CGHRW E Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_HUMAN (DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.931e-38 Identity = 67/112 (59.82%), Postives = 90/112 (80.36%), Query Frame = 3 Query: 222 MKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 554 ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+ C KC H EAVFFQ+ ++R E+ M L++VC P+CGHRW E Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_BOVIN (DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.931e-38 Identity = 67/112 (59.82%), Postives = 90/112 (80.36%), Query Frame = 3 Query: 222 MKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 554 ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+ C KC H EAVFFQ+ ++R E+ M L++VC P+CGHRW E Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_DROME (DNA-directed RNA polymerase II subunit RPB9 OS=Drosophila melanogaster GN=RpII15 PE=1 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 8.411e-38 Identity = 68/112 (60.71%), Postives = 87/112 (77.68%), Query Frame = 3 Query: 222 MKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 554 ++FC+ECNN+LYPKEDK+ KILLYACRNCD+++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ C KC H EAVFFQA T R EE M L++VC N NC HRW E Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_YEAST (DNA-directed RNA polymerase II subunit RPB9 OS=Saccharomyces cerevisiae GN=RPB9 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.540e-23 Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = 3 Query: 213 MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQATSRGEE-GMTLFFVCCNPNCGH 542 M+T +FCR+CNN+LYP+EDK+ LL+ CR C + E A + VYR+E+ ++GE V+QD+ +DPTLPR+ C KC E VFFQ+ R ++ M LFFVC +C H Sbjct: 1 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPKCHSRENVFFQSQQRRKDTSMVLFFVCL--SCSH 108
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_SCHPO (DNA-directed RNA polymerase II subunit RPB9 OS=Schizosaccharomyces pombe GN=rpb9 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.431e-23 Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = 3 Query: 213 MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQATS-RGEEGMTLFFVCCNPNCGHRWRE 554 MS ++C ECNN+LYP+EDK ++L ACRNCD+ E+A + VYR+E+ S E T V D + DPTLPR+ C +C EAVF+Q S RG+ MTL +VC +CG + E Sbjct: 1 MSNFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDK-ECPRCHQHEAVFYQTHSRRGDTMMTLIYVCV--HCGFAFEE 112
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_CANGA (DNA-directed RNA polymerase II subunit RPB9 OS=Candida glabrata GN=RPB9 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.480e-23 Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 3 Query: 213 MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQATSRGEE-GMTLFFVCCNPNCGH 542 M+T +FCR+CNN+LYP+EDK+ LL+ CR C + E A + VYR+E+ ++GE V+QD+ +DPTLPR+ C KC E VFFQ+ R ++ M LFFVC C H Sbjct: 1 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYIEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPKCHSRENVFFQSQQRRKDTSMVLFFVCL--ACSH 108
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_ASHGO (DNA-directed RNA polymerase II subunit RPB9 OS=Ashbya gossypii GN=RPB9 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.643e-23 Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = 3 Query: 213 MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQATSRGEE-GMTLFFVCCNPNCGH 542 M+T +FCR+CNN+LYP+EDK+++ LL+ CR C + E A VYR+E+ ++GE V+QD+ +DPTLPR+ C +C + VFFQ+ R + M LFFVC C H Sbjct: 1 MTTFRFCRDCNNMLYPREDKEEQRLLFECRTCTYAEEAGTPLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPRCHSHDNVFFQSQQRRRDTSMVLFFVCL--GCSH 108
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_ENCCU (DNA-directed RNA polymerase II subunit RPB9 OS=Encephalitozoon cuniculi GN=RPB9 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.485e-14 Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 3 Query: 225 KFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQATSRGEE--GMTLFFVCCNPNCGHRW 548 +FC+ECNN+LYPKE D L AC+NC+H + A ++ +Y +D+ DPTLP K + C C + ++FQ GEE +++F++CC C H W Sbjct: 4 RFCKECNNLLYPKE--DDNTLFLACKNCEHIQEAKSHRLYVKNFRPKHASIELYARDLVQDPTLPSVK-INCGNCGFNKGLYFQPRG-GEEDVALSIFYLCC--RCYHLW 107 The following BLAST results are available for this feature:
BLAST of CF838464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF838464 ID=CF838464; Name=CF838464; organism=Citrus sinensis; type=EST; length=840bpback to top |