CF838464

Overview
NameCF838464
Unique NameCF838464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_PIG (DNA-directed RNA polymerase II subunit RPB9 OS=Sus scrofa GN=POLR2I PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.931e-38
Identity = 67/112 (59.82%), Postives = 90/112 (80.36%), Query Frame = 3
Query:  222 MKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 554
            ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+   C KC H EAVFFQ+ ++R E+ M L++VC  P+CGHRW E
Sbjct:   14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125          
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_MOUSE (DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus GN=Polr2i PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.931e-38
Identity = 67/112 (59.82%), Postives = 90/112 (80.36%), Query Frame = 3
Query:  222 MKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 554
            ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+   C KC H EAVFFQ+ ++R E+ M L++VC  P+CGHRW E
Sbjct:   14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125          
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_HUMAN (DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.931e-38
Identity = 67/112 (59.82%), Postives = 90/112 (80.36%), Query Frame = 3
Query:  222 MKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 554
            ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+   C KC H EAVFFQ+ ++R E+ M L++VC  P+CGHRW E
Sbjct:   14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125          
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_BOVIN (DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.931e-38
Identity = 67/112 (59.82%), Postives = 90/112 (80.36%), Query Frame = 3
Query:  222 MKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 554
            ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+   C KC H EAVFFQ+ ++R E+ M L++VC  P+CGHRW E
Sbjct:   14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125          
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_DROME (DNA-directed RNA polymerase II subunit RPB9 OS=Drosophila melanogaster GN=RpII15 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 8.411e-38
Identity = 68/112 (60.71%), Postives = 87/112 (77.68%), Query Frame = 3
Query:  222 MKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQA-TSRGEEGMTLFFVCCNPNCGHRWRE 554
            ++FC+ECNN+LYPKEDK+ KILLYACRNCD+++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+   C KC H EAVFFQA T R EE M L++VC N NC HRW E
Sbjct:   18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129          
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_YEAST (DNA-directed RNA polymerase II subunit RPB9 OS=Saccharomyces cerevisiae GN=RPB9 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.540e-23
Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = 3
Query:  213 MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQATSRGEE-GMTLFFVCCNPNCGH 542
            M+T +FCR+CNN+LYP+EDK+   LL+ CR C + E A +  VYR+E+  ++GE   V+QD+ +DPTLPR+    C KC   E VFFQ+  R ++  M LFFVC   +C H
Sbjct:    1 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPKCHSRENVFFQSQQRRKDTSMVLFFVCL--SCSH 108          
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_SCHPO (DNA-directed RNA polymerase II subunit RPB9 OS=Schizosaccharomyces pombe GN=rpb9 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.431e-23
Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = 3
Query:  213 MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQATS-RGEEGMTLFFVCCNPNCGHRWRE 554
            MS  ++C ECNN+LYP+EDK  ++L  ACRNCD+ E+A  + VYR+E+  S  E T V  D + DPTLPR+    C +C   EAVF+Q  S RG+  MTL +VC   +CG  + E
Sbjct:    1 MSNFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDK-ECPRCHQHEAVFYQTHSRRGDTMMTLIYVCV--HCGFAFEE 112          
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_CANGA (DNA-directed RNA polymerase II subunit RPB9 OS=Candida glabrata GN=RPB9 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.480e-23
Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 3
Query:  213 MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQATSRGEE-GMTLFFVCCNPNCGH 542
            M+T +FCR+CNN+LYP+EDK+   LL+ CR C + E A +  VYR+E+  ++GE   V+QD+ +DPTLPR+    C KC   E VFFQ+  R ++  M LFFVC    C H
Sbjct:    1 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYIEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPKCHSRENVFFQSQQRRKDTSMVLFFVCL--ACSH 108          
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_ASHGO (DNA-directed RNA polymerase II subunit RPB9 OS=Ashbya gossypii GN=RPB9 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.643e-23
Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = 3
Query:  213 MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQATSRGEE-GMTLFFVCCNPNCGH 542
            M+T +FCR+CNN+LYP+EDK+++ LL+ CR C + E A    VYR+E+  ++GE   V+QD+ +DPTLPR+    C +C   + VFFQ+  R  +  M LFFVC    C H
Sbjct:    1 MTTFRFCRDCNNMLYPREDKEEQRLLFECRTCTYAEEAGTPLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPRCHSHDNVFFQSQQRRRDTSMVLFFVCL--GCSH 108          
BLAST of CF838464 vs. ExPASy Swiss-Prot
Match: RPB9_ENCCU (DNA-directed RNA polymerase II subunit RPB9 OS=Encephalitozoon cuniculi GN=RPB9 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.485e-14
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  225 KFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVKCQHGEAVFFQATSRGEE--GMTLFFVCCNPNCGHRW 548
            +FC+ECNN+LYPKE  D   L  AC+NC+H + A ++ +Y               +D+  DPTLP  K + C  C   + ++FQ    GEE   +++F++CC   C H W
Sbjct:    4 RFCKECNNLLYPKE--DDNTLFLACKNCEHIQEAKSHRLYVKNFRPKHASIELYARDLVQDPTLPSVK-INCGNCGFNKGLYFQPRG-GEEDVALSIFYLCC--RCYHLW 107          
The following BLAST results are available for this feature:
BLAST of CF838464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RPB9_PIG4.931e-3859.82DNA-directed RNA polymerase II subunit RPB9 OS=Sus... [more]
RPB9_MOUSE4.931e-3859.82DNA-directed RNA polymerase II subunit RPB9 OS=Mus... [more]
RPB9_HUMAN4.931e-3859.82DNA-directed RNA polymerase II subunit RPB9 OS=Hom... [more]
RPB9_BOVIN4.931e-3859.82DNA-directed RNA polymerase II subunit RPB9 OS=Bos... [more]
RPB9_DROME8.411e-3860.71DNA-directed RNA polymerase II subunit RPB9 OS=Dro... [more]
RPB9_YEAST1.540e-2347.75DNA-directed RNA polymerase II subunit RPB9 OS=Sac... [more]
RPB9_SCHPO3.431e-2347.83DNA-directed RNA polymerase II subunit RPB9 OS=Sch... [more]
RPB9_CANGA4.480e-2347.75DNA-directed RNA polymerase II subunit RPB9 OS=Can... [more]
RPB9_ASHGO7.643e-2345.95DNA-directed RNA polymerase II subunit RPB9 OS=Ash... [more]
RPB9_ENCCU6.485e-1436.36DNA-directed RNA polymerase II subunit RPB9 OS=Enc... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06K14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838464 ID=CF838464; Name=CF838464; organism=Citrus sinensis; type=EST; length=840bp
GGGGGCGCTCAGAATAGTGGATCCCCGGGCTGCAGGTTTTTTTTAAAACA
TATAAGGGCTGTACTANTGGAAAGATNTAAAAGAGNCCTCCTTATAAATC
AGTTTGCCCGNCAAAGAAACTCGAAACGCTCATTCGCTCACTCGCTCGCT
GCCTCTATCTCTCTCCTCCCTTTATTCTGTGTCTTTTTTGTTCTCTCTAC
TAATTTGCGGAAATGAGTACTATGAAATTTTGCCGCGAATGCAACAACAT
TTTGTACCCAAAAGAAGACAAGGATCAAAAGATCCTCCTTTATGCTTGCC
GCAACTGCGATCACCAGGAGGTTGCTGACAATAACTGCGTCTATAGGAAT
GAGGTACATCACTCTGTTGGTGAGCGCACTCAAGTTTTGCAGGATGTGGC
TGCGGATCCAACTCTTCCTCGAACTAAAGCTGTTCGTTGTGTAAAATGCC
AGCATGGTGAAGCCGTGTTTTTCCAGGCAACTTCTAGAGGGGAGGAGGGT
ATGACGCTGTTCTTTGTCTGCTGTAACCCTAACTGCGGCCACCGTTGGAG
AGAATAAGGTTTAATTGCTCCCATTCCAGACTTACATTAATGGATGCGTT
GTGTAACAGTTGATGAATCCATTTGCTTTAAGATTAGATTTCCATGAACT
CTCTCTACCCCCTCAGTTGTTACCAATGGTTTAATTACCAGTGTTATTTC
AGTAACCTCTCCGGCTCCTGTTACTGATGGTTTAATTATTGGTGTCATTT
TCACCGCCTTGATGTTCAAAATTATGAACAAAATTTACAACCATGCTCAA
AATTATGAACAAAATTTACAACCCAAAAAAAAAAAAAAAA
back to top